Evidence map›Paper›PMID 18259684›Full record

ArticleJournal of human genetics2008

Search for type 2 diabetes susceptibility genes on chromosomes 1q, 3q and 12q.

F Takeuchi, Y Ochiai, M Serizawa, K Yanai, N Kuzuya, H Kajio, S Honjo, N Takeda, Y Kaburagi, K Yasuda and 3 more

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 2 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 2 syntheses or guidelines pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Identification ofInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Di- and tripeptide transport in vertebrates: the contribution of teleost fish models.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

F TakeuchiDepartment of Medical Ecology and Informatics, Research Institute, International Medical Center of Japan, Tokyo, Japan.
Y OchiaiDepartment of Gene Diagnostics and Therapeutics, Research Institute, International Medical Center of Japan, 1-21-1 Toyama, Shinjuku-ku, Tokyo, 162-8655, Japan.
M SerizawaDepartment of Gene Diagnostics and Therapeutics, Research Institute, International Medical Center of Japan, 1-21-1 Toyama, Shinjuku-ku, Tokyo, 162-8655, Japan.
K YanaiDepartment of Gene Diagnostics and Therapeutics, Research Institute, International Medical Center of Japan, 1-21-1 Toyama, Shinjuku-ku, Tokyo, 162-8655, Japan.
N KuzuyaDivision of Metabolic Diseases, The Hospital, International Medical Center of Japan, Tokyo, Japan.
H KajioDivision of Metabolic Diseases, The Hospital, International Medical Center of Japan, Tokyo, Japan.
S HonjoDivision of Metabolic Diseases, The Hospital, International Medical Center of Japan, Tokyo, Japan.
N TakedaDivision of Ophthalmology, The Hospital, International Medical Center of Japan, Tokyo, Japan.
Y KaburagiDepartment of Metabolic Disorder, Research Institute, International Medical Center of Japan, Tokyo, Japan.
K YasudaDepartment of Metabolic Disorder, Research Institute, International Medical Center of Japan, Tokyo, Japan.
S ShirasawaDepartment of Pathology, Research Institute, International Medical Center of Japan, Tokyo, Japan.
T SasazukiInternational Medical Center of Japan, Tokyo, Japan.
N KatoDepartment of Gene Diagnostics and Therapeutics, Research Institute, International Medical Center of Japan, 1-21-1 Toyama, Shinjuku-ku, Tokyo, 162-8655, Japan. nokato@ri.imcj.go.jp.
Saitama International Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To systematically evaluate genetic susceptibility to type 2 diabetes (T2D) in "candidate" regions on chromosomes 1q, 3q and 12q, we examined disease association by using a total of 2,083 SNPs in two-step screening; a screening panel comprised 473 cases and 285 controls and an extended (or combined) panel involved 658 cases and 474 controls. For the total interval screened (40.9 Mb), suggestive evidence of association was provided for several annotated gene loci. For example, in the MCF2L2 gene on 3q, a significant association (a nominal P value of 0.00009) was observed when logistic regression analysis was performed for three associated SNPs (rs684846, rs35069869 and rs35368790) that belonged to different LD groups. Also, in the SLC15A4 gene on 12q, rs3765108 showed a marginally significant association with an overall estimated odds ratio of 0.79 (P=0.001). No significant association was found for known candidate gene loci on 3q, such as ADIPOQ and IGF2BP2. Using the available samples, we have observed disease associations of SNPs derived from two novel gene loci in the Japanese population through high-density searches of diabetes susceptibility in three chromosomal regions. Independent replication will clarify the etiological relevance of these genomic loci to T2D.

Indexed as

Asian PeopleCarrier ProteinsChromosomes, Human, Pair 1Chromosomes, Human, Pair 12Chromosomes, Human, Pair 3Diabetes Mellitus, Type 2Genetic Predisposition to DiseaseHumansJapanLinkage DisequilibriumLod ScoreLogistic ModelsMembrane Transport ProteinsNerve Tissue ProteinsPolymorphism, Single NucleotideCarrier ProteinsMembrane Transport ProteinsNerve Tissue ProteinsSLC15A4 protein, human

Identifiers

PMID18259684
OpenAlexW2087535368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.