Evidence map›Paper›PMID 18258262›Full record

ArticleJournal of molecular biology2008

Mapping the cofilin binding site on yeast G-actin by chemical cross-linking.

Elena E Grintsevich, Sabrina A Benchaar, Dora Warshaviak, Pinmanee Boontheung, Frédéric Halgand, Julian P Whitelegge, Kym F Faull, Rachel R Ogorzalek Loo, David Sept, Joseph A Loo and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Site-specific cation release drives actin filament severing by vertebrate cofilin.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  7. Drebrin inhibits cofilin-induced severing of F-actin.Cytoskeleton (Hoboken, N.J.) · 2014
    Article
  8. Article
  9. Article
  10. Drebrin-induced stabilization of actin filaments.The Journal of biological chemistry · 2013
    Article
  11. Identification of cation-binding sites on actin that drive polymerization and modulate bending stiffness.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Article
  13. Article
  14. The interaction of cofilin with the actin filament.Journal of molecular biology · 2011
    Article
  15. Article
  16. A nucleotide state-sensing region on actin.The Journal of biological chemistry · 2010
    Article
  17. Article
  18. Mapping of drebrin binding site on F-actin.Journal of molecular biology · 2010
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Elena E GrintsevichDepartment of Chemistry and Biochemistry, University of California-Los Angeles, CA, USA.
Sabrina A Benchaar
Dora Warshaviak
Pinmanee Boontheung
Frédéric Halgand
Julian P Whitelegge
Kym F Faull
Rachel R Ogorzalek Loo
David Sept
Joseph A Loo
Emil Reisler
University of California, Los Angeles · USCentre National de la Recherche Scientifique · FRWashington University in St. Louis · US

Funding

Dynamic Events in Myosin and Actin and Their FunctionR01GM077190 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REISLER, EMIL · 2006 to 2020
$6.2M
Mass Spectrometry of Protein AssembliesR01RR020004 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOO, JOSEPH A · 2004 to 2011
$2.7M
Protein interactions underlying actin-based motilityR01GM067246 · NIGMS · WASHINGTON UNIVERSITY · PI SEPT, DAVID S. · 2002 to 2006
$1.3M
NCRR NIH HHS R01 RR020004NCRR NIH HHS RR 20004NIGMS NIH HHS GM-067246NIGMS NIH HHS GM 077190NIGMS NIH HHS R01 GM067246NIGMS NIH HHS R01 GM077190
6 · The paper itself

Abstract

Cofilin is a major cytoskeletal protein that binds to both monomeric actin (G-actin) and polymeric actin (F-actin) and is involved in microfilament dynamics. Although an atomic structure of the G-actin-cofilin complex does not exist, models of the complex have been built using molecular dynamics simulations, structural homology considerations, and synchrotron radiolytic footprinting data. The hydrophobic cleft between actin subdomains 1 and 3 and, alternatively, the cleft between actin subdomains 1 and 2 have been proposed as possible high-affinity cofilin binding sites. In this study, the proposed binding of cofilin to the subdomain 1/subdomain 3 region on G-actin has been probed using site-directed mutagenesis, fluorescence labeling, and chemical cross-linking, with yeast actin mutants containing single reactive cysteines in the actin hydrophobic cleft and with cofilin mutants carrying reactive cysteines in the regions predicted to bind to G-actin. Mass spectrometry analysis of the cross-linked complex revealed that cysteine 345 in subdomain 1 of mutant G-actin was cross-linked to native cysteine 62 on cofilin. A cofilin mutant that carried a cysteine substitution in the alpha 3-helix (residue 95) formed a cross-link with residue 144 in actin subdomain 3. Distance constraints imposed by these cross-links provide experimental evidence for cofilin binding between actin subdomains 1 and 3 and fit a corresponding docking-based structure of the complex. The cross-linking of the N-terminal region of recombinant yeast cofilin to actin residues 346 and 374 with dithio-bis-maleimidoethane (12.4 A) and via disulfide bond formation was also documented. This set of cross-linking data confirms the important role of the N-terminal segment of cofilin in interactions with G-actin.

Indexed as

Actin Depolymerizing FactorsActinsAmino Acid SequenceBinding SitesCross-Linking ReagentsEthylmaleimideModels, MolecularMolecular Sequence DataMutationProtein BindingProtein Structure, QuaternaryProtein Structure, TertiarySaccharomyces cerevisiaeStructural Homology, ProteinActin Depolymerizing FactorsActinsCross-Linking Reagentsdithiobis(N-ethylmaleimide)Ethylmaleimide

Identifiers

PMID18258262
PMCPMC3052258
OpenAlexW2157806162

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.