Evidence map›Paper›PMID 18253035›Full record

ArticleCytogenetic and genome research2007

A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 7 and comparative mapping to the cattle and human genomes.

T Goldammer, R Weikard, M N Miziara, R M Brunner, R Agarwala, A A Schaffer, J E Womack, M E J Amaral

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Cytogenetic and genome research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. The Cytogenetics of the Water Buffalo: A Review.Animals : an open access journal from MDPI · 2021
    Review
  3. Genetic Association ofBioMed research international · 2021
    Article
  4. Water buffalo genome science comes of age.International journal of biological sciences · 2010
    Review
  5. Article
  6. Article
  7. An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

T GoldammerForschungsbereich Molekularbiologie, Forschungsinstitut fur die Biologie landwirtschaftlicher Nutztiere (FBN), Dummerstorf, Germany. tomgoldammer@fbn-dummerstorf.de
R Weikard
M N Miziara
R M Brunner
R Agarwala
A A Schaffer
J E Womack
M E J Amaral
National Institutes of Health · USResearch Institute for Farm Animal Biology (FBN) · DEInstituto de Biologia do Exército · BRLandesforschungsanstalt für Landwirtschaft und Fischerei Mecklenburg-Vorpommern · DETexas A&M University · USUniversidade Estadual Paulista (Unesp) · BR

Funding

Case Studies In GeneticsZ01LM000097 · NLM · NATIONAL LIBRARY OF MEDICINE · PI SCHAFFER, ALEJANDRO A · 2002 to 2008
$452k
Intramural NIH HHS Z01 LM000097
6 · The paper itself

Abstract

A preliminary radiation hybrid (RH) map containing 50 loci on chromosome 7 of the domestic river buffalo Bubalus bubalis (BBU; 2n = 50) was constructed based on a comparative mapping approach. The RH map of BBU7 includes thirty-seven gene markers and thirteen microsatellites. All loci have been previously assigned to Bos taurus (BTA) chromosome BTA6, which is known for its association with several economically important milk production traits in cattle. The map consists of two linkage groups spanning a total length of 627.9 cR(5,000). Comparative analysis of the BBU7 RH(5,000) map with BTA6 in cattle gave new evidence for strong similarity between the two chromosomes over their entire length and exposed minor differences in locus order. Comparison of the BBU7 RH(5,000) map with the Homo sapiens (HSA) genome revealed similarity with a large chromosome segment of HSA4. Comparative analysis of loci in both species revealed more variability than previously known in gene order and several chromosome rearrangements including centromere relocation. The data obtained in our study define the evolutionarily conserved segment on BBU7 and HSA4 to be between 3.5 megabases (Mb) and 115.8 Mb in the HSA4 (genome build 36) DNA sequence.

Indexed as

Radiation Hybrid MappingAnimalsBase SequenceBuffaloesCattleChromosomes, MammalianGenetic MarkersGenomeHumansGenetic Markers

Identifiers

PMID18253035
PMCPMC3779130
OpenAlexW2013408505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.