Evidence map›Paper›PMID 18252861›Full record

ArticleBlood2008

High-throughput sequence analysis of the tyrosine kinome in acute myeloid leukemia.

Marc M Loriaux, Ross L Levine, Jeffrey W Tyner, Stefan Fröhling, Claudia Scholl, Eric P Stoffregen, Gerlinde Wernig, Heidi Erickson, Christopher A Eide, Roland Berger and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 91 citations in OpenAlex.

  1. Trial
  2. Therapeutic advances of targeting receptor tyrosine kinases in cancer.Signal transduction and targeted therapy · 2024
    Review
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  14. [Dysregulation of HGF/c-Met signal pathway and their targeting drugs in lung cancer].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2014
    Review
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 2 countries.

Marc M LoriauxDivision of Hematology and Medical Oncology, Oregon Health & Science University Cancer Institute, Portland, OR 97239, USA.
Ross L Levine
Jeffrey W Tyner
Stefan Fröhling
Claudia Scholl
Eric P Stoffregen
Gerlinde Wernig
Heidi Erickson
Christopher A Eide
Roland Berger
Olivier A Bernard
James D Griffin
Richard M Stone
Benjamin Lee
Matthew Meyerson
Michael C Heinrich
Michael W Deininger
D Gary Gilliland
Brian J Druker
Oregon Health & Science University · USBrigham and Women's Hospital · USHarvard University · USHoward Hughes Medical Institute · USInserm · FRBroad Institute · USPortland VA Medical Center · US

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
Systems Analysis of Cancer Pathways in Mouse ModelsU01CA105423 · NCI · DANA-FARBER CANCER INSTITUTE · PI ORKIN, STUART H · 2004 to 2013
$8.4M
Molecular genetic analysis of tyrosine kinases in myeloproliferative disordersK08HL082677 · NHLBI · SLOAN-KETTERING INST CAN RESEARCH · PI LEVINE, ROSS L · 2006 to 2010
$670k
Murine models of activated FLT3 receptor tyrosine kinaseK08CA113434 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI LEE, BENJAMIN H · 2006 to 2007
$280k
Howard Hughes Medical InstituteNCI NIH HHS CA105423NCI NIH HHS CA113434NCI NIH HHS CA66996NCI NIH HHS K08 CA113434NCI NIH HHS P01 CA066996NCI NIH HHS U01 CA105423NHLBI NIH HHS HL082677NHLBI NIH HHS K08 HL082677
6 · The paper itself

Abstract

To determine whether aberrantly activated tyrosine kinases other than FLT3 and c-KIT contribute to acute myeloid leukemia (AML) pathogenesis, we used high-throughput (HT) DNA sequence ana-lysis to screen exons encoding the activation loop and juxtamembrane domains of 85 tyrosine kinase genes in 188 AML patients without FLT3 or c-KIT mutations. The screen identified 30 nonsynonymous sequence variations in 22 different kinases not previously reported in single-nucleotide polymorphism (SNP) databases. These included a novel FLT3 activating allele and a previously described activating mutation in MET (METT1010I). The majority of novel sequence variants were stably expressed in factor-dependent Ba/F3 cells. Apart from one FLT3 allele, none of the novel variants showed constitutive phosphorylation by immunoblot analysis and none transformed Ba/F3 cells to factor-independent growth. These findings indicate the majority of these alleles are not potent tyrosine kinase activators in this cellular context and that a significant proportion of nonsynonymous sequence variants identified in HT DNA sequencing screens may not have functional significance. Although some sequence variants may represent SNPs, these data are consistent with recent reports that a significant fraction of such sequence variants are "passenger" rather than "driver" alleles and underscore the importance of functional assessment of candidate disease alleles.

Indexed as

Polymorphism, Single NucleotideBase SequenceDNA Mutational Analysisfms-Like Tyrosine Kinase 3HumansLeukemia, Myeloid, AcuteProtein-Tyrosine Kinasesfms-Like Tyrosine Kinase 3Protein-Tyrosine Kinases

Identifiers

PMID18252861
PMCPMC2343606
OpenAlexW2005173795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.