Evidence map›Paper›PMID 18252844›Full record

ArticleThe Plant cell2008

An inositol polyphosphate 5-phosphatase functions in PHOTOTROPIN1 signaling in Arabidopis by altering cytosolic Ca2+.

Xu Chen, Wen-Hui Lin, Yuan Wang, Sheng Luan, Hong-Wei Xue

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Phototropin Interactions with SUMO Proteins.Plant & cell physiology · 2021
    Article
  6. Article
  7. Article
  8. The Function of Inositol Phosphatases in Plant Tolerance to Abiotic Stress.International journal of molecular sciences · 2019
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Calcium: The Missing Link in Auxin Action.Plants (Basel, Switzerland) · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Xu ChenShanghai Institutes for Biological Science-University of California Berkeley Center of Molecular Life Sciences, Chinese Academy of Sciences, 20032 Shanghai, China.
Wen-Hui Lin
Yuan Wang
Sheng Luan
Hong-Wei Xue
Center for Excellence in Molecular Plant Sciences · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inositol polyphosphate 5-phosphatase (5PTase) is a key enzyme in the phosphatidylinositol metabolic pathway, which plays critical roles in a number of cellular processes in plants. Our previous work implicated the role of 5PTase13, which encodes a WD40-containing type II 5PTase, in hormone-mediated cotyledon vein development. Here, we show that 5PTase13 is also involved in blue light responses in Arabidopsis thaliana. Compared with that in darkness, the expression of 5PTase13 was suppressed by blue light irradiation, and disruption of the gene resulted in shortened hypocotyls and expanded cotyledons. Genetic analysis showed that 5PTase13 acted independently from CRYPTOCHROME1 and CONSTITUTIVE PHOTOMORPHOGENIC1 but interacted functionally with PHOTOTROPIN1 (PHOT1). The expression level of 5PTase13 was significantly enhanced in phot1 single or phot1 phot2 double mutants under blue light, and suppression of 5PTase13 expression rescued the elongated hypocotyls in the phot1 or phot1 phot2 mutants. Further analysis showed that the blue light-induced elevation of cytosolic Ca2+ was inhibited in the phot1 mutant but enhanced in the 5pt13 mutant, suggesting that 5PTase13 antagonizes PHOT1-mediated effects on calcium signaling under blue light.

Indexed as

ArabidopsisArabidopsis ProteinsCalciumCotyledonCryptochromesCytosolFlavoproteinsHypocotylImmunoprecipitationLightMolecular Sequence DataPhosphoinositide 5-PhosphatasesPhosphoproteinsPhosphoric Monoester HydrolasesPlants, Genetically ModifiedProtein Binding5PTase13 protein, ArabidopsisArabidopsis ProteinsAT2G32950 protein, ArabidopsisCalciumCRY1 protein, ArabidopsisCryptochromesFlavoproteinsNPH1 protein, ArabidopsisPhosphoinositide 5-PhosphatasesPhosphoproteinsPhosphoric Monoester HydrolasesPHOT2 protein, ArabidopsisProtein Serine-Threonine KinasesUbiquitin-Protein Ligases

Identifiers

PMID18252844
PMCPMC2276452
OpenAlexW1977219228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.