Evidence map›Paper›PMID 18247136›Full record

ArticlePlant molecular biology2008

Genome-wide identification of NBS resistance genes in Populus trichocarpa.

Annegret Kohler, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher, Danny Geelen, Frédéric Duchaussoy, Blake C Meyers, Wout Boerjan, Francis Martin

Abstract read
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In one paragraph

Article in Plant molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
22.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 259 citations in OpenAlex.

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  16. Comprehensive Analysis and Functional Verification of theInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Review
  19. Article
  20. Frontiers in plant science · 2023
    Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Annegret KohlerUnité Mixte de Recherche INRA/UHP 1136 Interactions Arbres/Microorganismes, Institut National de la Recherche Agronomique, Centre de Recherches de Nancy, 54280 Champenoux, France. kohler@nancy.inra.fr
Cécile Rinaldi
Sébastien Duplessis
Marie Baucher
Danny Geelen
Frédéric Duchaussoy
Blake C Meyers
Wout Boerjan
Francis Martin
Institut National de la Recherche Agronomique · MABiotechnology Institute · USGhent University · BEGhent University Hospital · BEUniversité Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of approximately 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.

Indexed as

Genome, PlantAmino Acid SequenceArabidopsisGene Expression Regulation, PlantGreen Fluorescent ProteinsImmunity, InnateLeucine-Rich Repeat ProteinsMicroscopy, ConfocalMolecular Sequence DataNicotianaOligonucleotide Array Sequence AnalysisOryzaPhylogenyPlant DiseasesPlant ProteinsPlants, Genetically ModifiedGreen Fluorescent ProteinsLeucine-Rich Repeat ProteinsPlant ProteinsProteinsRecombinant Fusion Proteins

Identifiers

PMID18247136
OpenAlexW2056830064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.