Evidence map›Paper›PMID 18245854›Full record

ArticleGenetics2008

Conditional switches for extracellular matrix patterning in Drosophila melanogaster.

Arvinder Khokhar, Nan Chen, Ji-Ping Yuan, Yishi Li, Gary N Landis, Gregory Beaulieu, Harminder Kaur, John Tower

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Finishing the egg.Genetics · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. TGF-beta-dependent and -independent roles of STRAP in cancer.Frontiers in bioscience (Landmark edition) · 2011
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Arvinder KhokharDepartment of Biological Sciences, University of Southern California, Los Angeles, California 90089-2910, USA.
Nan Chen
Ji-Ping Yuan
Yishi Li
Gary N Landis
Gregory Beaulieu
Harminder Kaur
John Tower
University of Southern California · US

Funding

AGING-SPECIFIC GENE EXPRESSION IN DROSOPHILAR01AG011833 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TOWER, JOHN GERARD · 1994 to 2013
$2.8M
DROSOPHILA CHORION GENE AMPLIFICATIONR01GM048449 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TOWER, JOHN GERARD · 1994 to 1996
–
NIA NIH HHS AG11833NIA NIH HHS R01 AG011833NIGMS NIH HHS GM48449
6 · The paper itself

Abstract

An F(1) mutagenesis strategy was developed to identify conditional mutations affecting extracellular matrix (ECM) patterning. Tubulogenesis requires coordinated movement of epithelial cells and deposition of a multilayered ECM. In the Drosophila ovary, an epithelium of follicle cells creates the eggshells, including the paired tubular dorsal appendages (DAs) that act as breathing tubes for the embryo. A P-element mutagenesis strategy allowed for conditional overexpression of hundreds of genes in follicle cells. Conditional phenotypes were scored at the level of individual mutant (F(1)) female flies. ECM pattern regulators were readily identified including MAPK signaling gene ets domain lacking (fused DAs), Wnt pathway genes frizzled 3 and osa (long DAs), Hh pathway gene debra (branched DAs), and transcription factor genes sima/HIF-1alpha, ush, lilli, Tfb1, broad, and foxo. In moving cells the [Ca(2+)]/calcineurin pathway can regulate adhesion to ECM while adherens junctions link cells together. Accordingly, thin eggshell and DA phenotypes were identified for the calcineurin regulator calreticulin and the adherens junction component arc. Finally a tubulogenesis defect phenotype was identified for the gene pterodactyl, homologous to the mammalian serine/threonine receptor-associated protein (STRAP) that integrates the TGF-beta and PI3K/AKT signaling pathways. Because phenotypes can be scored in each mutant fly before and after gene induction, this F(1) conditional mutagenesis strategy should allow for increased scale in screens for mutations affecting repeated (reiterated) events in adult animals, including gametogenesis, movement, behavior, and learning.

Indexed as

AnimalsDoxycyclineDrosophila melanogasterEgg ShellExonsExtracellular MatrixFemaleGene Expression RegulationGenes, DominantIntronsMutationOrganogenesisOvarian FollicleTranscriptional ActivationWings, AnimalDoxycycline

Identifiers

PMID18245854
PMCPMC2278091
OpenAlexW1999936156

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.