Evidence map›Paper›PMID 18245840›Full record

ArticleGenetics2008

Functioning of the Drosophila Wilms'-tumor-1-associated protein homolog, Fl(2)d, in Sex-lethal-dependent alternative splicing.

Jill K M Penn, Patricia Graham, Girish Deshpande, Gretchen Calhoun, Ahmad Sami Chaouki, Helen K Salz, Paul Schedl

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. The Critical Role of RNA mCellular and molecular neurobiology · 2023
    Review
  3. Article
  4. The RNA mCell death & disease · 2022
    Review
  5. Loss of WTAP Impairs Early Parthenogenetic Embryo Development.Animals : an open access journal from MDPI · 2021
    Article
  6. Role of Hakai in mNature communications · 2021
    Article
  7. Review
  8. Pre-mRNA modifications and their role in nuclear processing.Quantitative biology (Beijing, China) · 2018
    Article
  9. Dynamic transcriptomic mCell research · 2018
    Review
  10. Review
  11. Xio is a component of theProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Article
  13. Article
  14. The mNature communications · 2017
    Article
  15. Article
  16. spenito is required for sex determination in Drosophila melanogaster.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jill K M PennDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Patricia Graham
Girish Deshpande
Gretchen Calhoun
Ahmad Sami Chaouki
Helen K Salz
Paul Schedl
Princeton University · USCase Western Reserve University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
TRAINING IN NORMAL AND ABNORMAL DEVELOPMENTT32HD007104 · NICHD · CASE WESTERN RESERVE UNIVERSITY · PI HARTE, PETER J. · 1985 to 2010
$3.5M
Regulation of Sex-lethal pre-mRNA splicing during Drosophila developmentR01GM061039 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI SALZ, HELEN KAREN · 2002 to 2010
$2.5M
NICHD NIH HHS T32 HD007104NICHD NIH HHS T32-HD07104NIGMS NIH HHS R01 GM061039NIGMS NIH HHS R01-GM61039NIGMS NIH HHS T32 GM007250NIGMS NIH HHS T32-GM07250
6 · The paper itself

Abstract

fl(2)d, the Drosophila homolog of Wilms'-tumor-1-associated protein (WTAP), regulates the alternative splicing of Sex-lethal (Sxl), transformer (tra), and Ultrabithorax (Ubx). Although WTAP has been found in functional human spliceosomes, exactly how it contributes to the splicing process remains unknown. Here we attempt to identify factors that interact genetically and physically with fl(2)d. We begin by analyzing the Sxl-Fl(2)d protein-protein interaction in detail and present evidence suggesting that the female-specific fl(2)d(1) allele is antimorphic with respect to the process of sex determination. Next we show that fl(2)d interacts genetically with early acting general splicing regulators and that Fl(2)d is present in immunoprecipitable complexes with Snf, U2AF50, U2AF38, and U1-70K. By contrast, we could not detect Fl(2)d complexes containing the U5 snRNP protein U5-40K or with a protein that associates with the activated B spliceosomal complex SKIP. Significantly, the genetic and molecular interactions observed for Sxl are quite similar to those detected for fl(2)d. Taken together, our findings suggest that Sxl and fl(2)d function to alter splice-site selection at an early step in spliceosome assembly.

Indexed as

AnimalsAnimals, Genetically ModifiedDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianFemaleGenes, LethalHumansMaleNuclear ProteinsRNA-Binding ProteinsTumor Suppressor ProteinsWilms TumorDrosophila Proteinsfl(2)d protein, DrosophilaNuclear ProteinsRNA-Binding ProteinsSxl protein, DrosophilaTumor Suppressor Proteins

Identifiers

PMID18245840
PMCPMC2248336
OpenAlexW2143713379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.