Evidence map›Paper›PMID 18245823›Full record

ArticleGenetics2008

The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products.

Daniel M Stoebel, Antony M Dean, Daniel E Dykhuizen

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 229 citations in OpenAlex.

  1. Review
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  10. Pulsatile basal gene expression as a fitness determinant in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. How total mRNA influences cell growth.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Proteolytic stability and aggregation in a key metabolic enzyme of bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. iScience · 2023
    Article
  17. Review
  18. Article
  19. Article
  20. Article

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Daniel M StoebelDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York 11794, USA. daniel_stoebel@tcd.ie
Antony M Dean
Daniel E Dykhuizen
Stony Brook University · USBiotechnology Institute · US

Funding

AN EVOLUTIONARY ANALYSIS OF FIMBRIAE IN ENTEROBACTERIAR01GM060731 · NIGMS · UNIVERSITY OF LOUISVILLE · PI DYKHUIZEN, DANIEL E. · 2000 to 2007
$2.6M
Evolution of a Dehydrogenase in its Adaptive LandscapeR01GM060611 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DEAN, ANTONY M. · 2001 to 2009
$2.4M
NIGMS NIH HHS GM060611NIGMS NIH HHS GM060731NIGMS NIH HHS R01 GM060611NIGMS NIH HHS R01 GM060731
6 · The paper itself

Abstract

Transcriptional regulatory networks allow bacteria to express proteins only when they are needed. Adaptive hypotheses explaining the evolution of regulatory networks assume that unneeded expression is costly and therefore decreases fitness, but the proximate cause of this cost is not clear. We show that the cost in fitness to Escherichia coli strains constitutively expressing the lactose operon when lactose is absent is associated with the process of making the lac gene products, i.e., associated with the acts of transcription and/or translation. These results reject the hypotheses that regulation exists to prevent the waste of amino acids in useless protein or the detrimental activity of unnecessary proteins. While the cost of the process of protein expression occurs in all of the environments that we tested, the expression of the lactose permease could be costly or beneficial, depending on the environment. Our results identify the basis of a single selective pressure likely acting across the entire E. coli transcriptome.

Indexed as

Gene Expression Regulation, BacterialAmino AcidsBiological TransportDNA, BacterialEscherichia coliEscherichia coli ProteinsGlucoseLac OperonMaltoseNitrophenylgalactosidesRegression AnalysisSelection, Genetic4-nitrophenylgalactosideAmino AcidsDNA, BacterialEscherichia coli ProteinsGlucoseMaltoseNitrophenylgalactosides

Identifiers

PMID18245823
PMCPMC2278061
OpenAlexW2034598535

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.