Evidence map›Paper›PMID 18245382›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Discovery of CD8+ T cell epitopes in Chlamydia trachomatis infection through use of caged class I MHC tetramers.

Gijsbert M Grotenbreg, Nadia R Roan, Eduardo Guillen, Rob Meijers, Jia-Huai Wang, George W Bell, Michael N Starnbach, Hidde L Ploegh

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 75 citations in OpenAlex.

  1. CD8iScience · 2026
    Article
  2. Viral Vector-BasedVaccines · 2024
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  15. Detection, phenotyping, and quantification of antigen-specific T cells using a peptide-MHC dodecamer.Proceedings of the National Academy of Sciences of the United States of America · 2016
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  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Gijsbert M GrotenbregWhitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02139, USA.
Nadia R Roan
Eduardo Guillen
Rob Meijers
Jia-Huai Wang
George W Bell
Michael N Starnbach
Hidde L Ploegh
Whitehead Institute for Biomedical Research · USLaboratory of Molecular Genetics · PLDana-Farber Cancer Institute · USPediatrics and Genetics · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Class I MHC tetramers allow direct phenotypic identification of CD8(+) T cell populations, but their production remains laborious. A peptide exchange strategy that employs class I MHC products loaded with conditional ligands (caged MHC molecules) provides a fast and straightforward method to obtain diverse arrays of class I MHC tetramers and facilitates CD8(+) T cell epitope discovery. Here, we describe the development of photocleavable analogs of the FAPGNYPAL (SV9) epitope that bind H-2K(b) and H-2D(b) with full retention of their structural and functional integrity. We ranked all possible H-2K(b) octameric and H-2D(b) nonameric epitopes that span the genome of Chlamydia trachomatis and prepared MHC tetramers from approximately 2,000 of the highest scoring peptides by replacement of the SV9 analog with the peptide of choice. The resulting 2,000-member class I MHC tetramer array allowed the discovery of two variants of an epitope derived from polymorphic membrane protein I (PmpI) and an assessment of the kinetics of emergence and the effector function of the corresponding CD8(+) T cells.

Indexed as

Amino Acid SequenceAnimalsCD8-Positive T-LymphocytesChlamydia InfectionsChlamydia trachomatisComputational BiologyCrystallography, X-RayEpitopes, T-LymphocyteH-2 AntigensHistocompatibility Antigens Class ILigandsLightMiceMice, Inbred C57BLModels, MolecularMolecular Sequence DataEpitopes, T-LymphocyteH-2 AntigensHistocompatibility Antigens Class ILigandsPeptides

Identifiers

PMID18245382
PMCPMC2268777
OpenAlexW2072616993

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.