Evidence map›Paper›PMID 18245327›Full record

ArticleGenetics2008

A role for Chd1 and Set2 in negatively regulating DNA replication in Saccharomyces cerevisiae.

Debabrata Biswas, Shinya Takahata, Hua Xin, Rinku Dutta-Biswas, Yaxin Yu, Tim Formosa, David J Stillman

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

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  14. Review
  15. Article
  16. Perceiving the epigenetic landscape through histone readers.Nature structural & molecular biology · 2012
    Review
  17. Understanding the language of Lys36 methylation at histone H3.Nature reviews. Molecular cell biology · 2012
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Debabrata BiswasDepartment of Pathology, University of Utah Health Sciences Center, Salt Lake City, Utah 84112, USA.
Shinya Takahata
Hua Xin
Rinku Dutta-Biswas
Yaxin Yu
Tim Formosa
David J Stillman
University of Utah · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin-modifying factors regulate both transcription and DNA replication. The yFACT chromatin-reorganizing complex is involved in both processes, and the sensitivity of some yFACT mutants to the replication inhibitor hydroxyurea (HU) is one indication of a replication role. This HU sensitivity can be suppressed by disruptions of the SET2 or CHD1 genes, encoding a histone H3(K36) methyltransferase and a chromatin remodeling factor, respectively. The additive effect of set2 and chd1 mutations in suppressing the HU sensitivity of yFACT mutants suggests that these two factors function in separate pathways. The HU suppression is not an indirect effect of altered regulation of ribonucleotide reductase induced by HU. set2 and chd1 mutations also suppress the HU sensitivity of mutations in other genes involved in DNA replication, including CDC2, CTF4, ORC2, and MEC1. Additionally, a chd1 mutation can suppress the lethality normally caused by disruption of either MEC1 or RAD53 DNA damage checkpoint genes, as well as the lethality seen when a mec1 sml1 mutant is exposed to low levels of HU. The pob3 defect in S-phase progression is suppressed by set2 or chd1 mutations, suggesting that Set2 and Chd1 have specific roles in negatively regulating DNA replication.

Indexed as

DNA ReplicationChromatinDNA-Binding ProteinsGene DeletionHydroxyureaMethyltransferasesMutagenesisMutationRibonucleoside Diphosphate ReductaseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseTranscription, GeneticCHD1 protein, S cerevisiaeChromatinDNA-Binding ProteinsHydroxyureaMethyltransferasesRibonucleoside Diphosphate ReductaseSaccharomyces cerevisiae ProteinsSet2 protein, S cerevisiae

Identifiers

PMID18245327
PMCPMC2248355
OpenAlexW2033810979

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.