Evidence map›Paper›PMID 18243489›Full record

ArticleExperimental hematology2008

Combinatorial regulation of novel erythroid gene expression in zebrafish.

Jenna L Galloway, Rebecca A Wingert, Christine Thisse, Bernard Thisse, Leonard I Zon

Open access · bronzeAbstract read
In one paragraph

Article in Experimental hematology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  6. Prostaglandin signaling regulates renal multiciliated cell specification and maturation.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  9. eLife · 2018
    Article
  10. Article
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  12. Review
  13. Nephrotoxin Microinjection in Zebrafish to Model Acute Kidney Injury.Journal of visualized experiments : JoVE · 2016
    Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Article
  20. Glcci1 deficiency leads to proteinuria.Journal of the American Society of Nephrology : JASN · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Jenna L GallowayStem Cell Program and Division of Hematology/Oncology, Children's Hospital Boston and Dana-Farber Cancer Institute, Boston, Mass., USA.
Rebecca A Wingert
Christine Thisse
Bernard Thisse
Leonard I Zon
Brigham and Women's Hospital · USCentre National de la Recherche Scientifique · FRDana-Farber Cancer Institute · USInstitut de génétique et de biologie moléculaire et cellulaire · FRMassachusetts General Hospital · US

Funding

Characterizing the Zebrafish GenomeR37DK055381 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 2003 to 2010
$5.8M
EMBRYONIC HEMATOPOIESISR01HL048801 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1992 to 2016
$5.7M
EXPRESSION OF THE ZEBRAFISH GENOME DURING EMBRYOGENESISR01RR015402 · NCRR · LAB DE GENETIQUE MOLECULAIRE DES EUCARYO · PI THISSE, BERNARD V · 2001 to 2006
$1.9M
NCRR NIH HHS R01 RR015402NCRR NIH HHS R01 RR15402NHLBI NIH HHS R01 HL048801NHLBI NIH HHS R01 HL48801-13NIDDK NIH HHS R37 DK055381
6 · The paper itself

Abstract

objectiveThe specification and differentiation of hematopoietic stem cells into red blood cells requires precise coordination by multiple transcription factors. Most genes important for erythroid maturation are regulated by the Gata family of DNA-binding proteins. Previously, we identified three novel genes kelch-repeat containing protein (krcp), kiaa0650, and testhymin/glucocorticoid inducible transcript 1 (glcci1) to be expressed in erythroid cells in a Gata-independent manner, and we sought to further understand how these transcripts are regulated during zebrafish hematopoiesis. MATERIALS AND

methodsWe employed a loss-of-function approach, using combinations of antisense morpholinos to hematopoietic transcription factors and assayed for changes in gene expression in zebrafish embryos.

resultsUpon examination of embryos deficient for Gata1, Gata2, Biklf, and/or Scl, we found distinct gene combinations were required for expression of the novel genes. While krcp expression was dependent upon Gata1 and Biklf, kiaa0650 expression was greatly reduced and glcci1 was maintained in Gata1/Gata2/Biklf-deficient embryos. As with the gata1 gene, kiaa0650 and krcp required Scl for blood expression. Although reduced, glcci1 was expressed in posterior blood precursors in the absence of Scl and Gata2.

conclusionsThis work identifies glcci1 as having Scl-independent expression in the posterior hematopoietic mesoderm, suggesting that its posterior expression is activated by factors upstream or parallel to Scl and Gata2. Additionally, these studies establish that blood gene expression programs are regulated by transcription factors acting in combination during erythroid maturation.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBasic Helix-Loop-Helix ProteinsEmbryo, NonmammalianErythroid CellsErythropoiesisGATA1 Transcription FactorGATA2 Transcription FactorKruppel-Like Transcription FactorsOligonucleotides, AntisenseProto-Oncogene ProteinsReceptors, Purinergic P2Receptors, Purinergic P2YReverse Transcriptase Polymerase Chain ReactionT-Cell Acute Lymphocytic Leukemia Protein 1Transcription FactorsBasic Helix-Loop-Helix Proteinsgata1a protein, zebrafishGATA1 Transcription FactorGata2a protein, zebrafishGATA2 Transcription Factorklf4 protein, zebrafishKruppel-Like Transcription FactorsOligonucleotides, AntisenseP2Y14 receptor, humanProto-Oncogene ProteinsReceptors, Purinergic P2Receptors, Purinergic P2Ytal1 protein, zebrafishT-Cell Acute Lymphocytic Leukemia Protein 1Transcription FactorsZebrafish Proteins

Identifiers

PMID18243489
PMCPMC2390894
OpenAlexW2162850256

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.