Evidence map›Paper›PMID 18242637›Full record

ArticleJournal of immunological methods2008

Design and testing of PCR primers for the construction of scFv libraries representing the immunoglobulin repertoire of rats.

Jorge Sepulveda, Charles B Shoemaker

Open access · greenAbstract read
In one paragraph

Article in Journal of immunological methods, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  6. Generation and Characterization of a New Monoclonal Antibody Against CXCL4.Monoclonal antibodies in immunodiagnosis and immunotherapy · 2015
    Article
  7. Article
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  10. Identification and characterization of a novel cell-penetrating peptide.Biochemical and biophysical research communications · 2009
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jorge SepulvedaTufts Cummings School of Veterinary Medicine, North Grafton, MA 01536, United States.
Charles B Shoemaker
New England Disabled Sports · US

Funding

In vivo panning for schistosome protective epitopesR21AI061517 · NIAID · TUFTS UNIVERSITY BOSTON · PI SHOEMAKER, CHARLES BIX · 2004 to 2005
$436k
NIAID NIH HHS R21 AI061517
6 · The paper itself

Abstract

Rats are widely used as a model in the study of many important diseases, yet their utility in research is limited by the lack of robust technology for the production of rat recombinant antibodies. Here we have identified and compiled putative rat immunoglobulin sequences by bioinformatic analysis of recently available genomic and EST databases, and used this information to design PCR primers to amplify rat V(H) and V(L) domain coding DNA representing the expressed repertoire of the animal. These primer sets were successfully tested and used to produce a scFv phage display library from rats that had been infected by the blood fluke, Schistosoma mansoni. The library was selected for scFvs that bind to extracellular loop epitopes on either of two known immunogenic S. mansoni membrane proteins, Sm23 and SmTsp2, both of the tetraspanin protein family. Two unique scFvs were identified that bind to each tetraspanin and shown to have excellent specificity for the target, including recognition of the native tetraspanins produced by the fluke. The primers and methods developed for rat scFvs should be of use to others seeking to characterize the antibody repertoire and/or prepare recombinant antibodies from this model.

Indexed as

Amino Acid SequenceAnimalsAntigen-Antibody ReactionsAntigens, HelminthDisease Models, AnimalDNA PrimersEnzyme-Linked Immunosorbent AssayEpitopesGenetic VectorsHelminth ProteinsImmunoglobulin FragmentsMaleMolecular Sequence DataPeptide LibraryPolymerase Chain ReactionRatsAntigens, Helminthantigen Sm23, SchistosomaDNA PrimersEpitopesHelminth ProteinsImmunoglobulin Fragmentsimmunoglobulin FvPeptide Library

Identifiers

PMID18242637
PMCPMC2362146
OpenAlexW2054550884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.