Evidence map›Paper›PMID 18241855›Full record

ArticleDevelopmental biology2008

Analysis of the Otd-dependent transcriptome supports the evolutionary conservation of CRX/OTX/OTD functions in flies and vertebrates.

Swati S Ranade, Donghui Yang-Zhou, Sek Won Kong, Elizabeth C McDonald, Tiffany A Cook, Francesca Pignoni

Open access · greenAbstract readComparative Study
In one paragraph

Article in Developmental biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. The power of the (imperfect) palindrome: Sequence-specific roles of palindromic motifs in gene regulation.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Mechanisms of blindness: animal models provide insight into distinct CRX-associated retinopathies.Developmental dynamics : an official publication of the American Association of Anatomists · 2014
    Review
  8. Article
  9. Review
  10. Orthodenticle and Kruppel homolog 1 regulate Drosophila photoreceptor maturation.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  11. OTX2 and CRX rescue overlapping and photoreceptor-specific functions in the Drosophila eye.Developmental dynamics : an official publication of the American Association of Anatomists · 2012
    Article
  12. Review
  13. Transphyletic conservation of developmental regulatory state in animal evolution.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Eye evolution: common use and independent recruitment of genetic components.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Swati S RanadeDepartment of Ophthalmology, Harvard Medical School and the Massachusetts Eye and Ear Infirmary, 243 Charles Street MEEI 507, Boston, MA 02445, USA.
Donghui Yang-Zhou
Sek Won Kong
Elizabeth C McDonald
Tiffany A Cook
Francesca Pignoni
Massachusetts Eye and Ear Infirmary · USCincinnati Children's Hospital Medical Center · USHarvard University · US

Funding

P30 Core Grant for Vision ResearchP30EY014104 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Eric A Pierce · 2002 to 2026
$15.1M
GENETIC CONTROL OF EYE SPECIFICATIONR01EY013167 · NEI · UPSTATE MEDICAL UNIVERSITY · PI PIGNONI, FRANCESCA · 2000 to 2010
$2.9M
Training Program in OrganogenesisT32HD046387 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI WYLIE, CHRISTOPHER C · 2006 to 2010
$1.1M
NEI NIH HHS P30 EY014104NEI NIH HHS P30EY14104NEI NIH HHS R01 EY013167NEI NIH HHS R01EY013167NICHD NIH HHS HD046387NICHD NIH HHS T32 HD046387
6 · The paper itself

Abstract

Homeobox transcription factors of the vertebrate CRX/OTX family play critical roles in photoreceptor neurons, the rostral brain and circadian processes. In mouse, the three related proteins, CRX, OTX1, and OTX2, fulfill these functions. In Drosophila, the single founding member of this gene family, called orthodenticle (otd), is required during embryonic brain and photoreceptor neuron development. We have used global gene expression analysis in late pupal heads to better characterize the post-embryonic functions of Otd in Drosophila. We have identified 61 genes that are differentially expressed between wild type and a viable eye-specific otd mutant allele. Among them, about one-third represent potentially direct targets of Otd based on their association with evolutionarily conserved Otd-binding sequences. The spectrum of biological functions associated with these gene targets establishes Otd as a critical regulator of photoreceptor morphology and phototransduction, as well as suggests its involvement in circadian processes. Together with the well-documented role of otd in embryonic patterning, this evidence shows that vertebrate and fly genes contribute to analogous biological processes, notwithstanding the significant divergence of the underlying genetic pathways. Our findings underscore the common evolutionary history of photoperception-based functions in vertebrates and invertebrates and support the view that a complex nervous system was already present in the last common ancestor of all bilateria.

Indexed as

AnimalsAnimals, Genetically ModifiedCircadian RhythmDrosophilaDrosophila ProteinsEvolution, MolecularFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGenes, InsectHomeodomain ProteinsLac OperonLight Signal TransductionMaleMutationOligonucleotide Array Sequence Analysiscone rod homeobox proteinDrosophila ProteinsHomeodomain Proteinsoc protein, DrosophilaOtx Transcription FactorsTrans-Activators

Identifiers

PMID18241855
PMCPMC2329912
OpenAlexW2084953599

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.