Evidence map›Paper›PMID 18235504›Full record

ArticleNature2008

Structural basis for the function and inhibition of an influenza virus proton channel.

Amanda L Stouffer, Rudresh Acharya, David Salom, Anna S Levine, Luigi Di Costanzo, Cinque S Soto, Valentina Tereshko, Vikas Nanda, Steven Stayrook, William F DeGrado

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 313 papers.

0numbers the graph read from it
0cells of the map it votes in
313citing papers in PubMed
39.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

313 citing papers in PubMed, 637 citations in OpenAlex.

  1. Review
  2. Cavity acidification limits ferritin iron biomineralization.Journal of inorganic biochemistry · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Solid-State NMR of Virus Membrane Proteins.Accounts of chemical research · 2025
    Article
  8. The Role of Cholesterol in M2 Clustering and Viral Budding Explained.Journal of chemical theory and computation · 2025
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Activation of the influenza B M2 proton channel (BM2).bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Transcendent Aspects of Proton Channels.Annual review of physiology · 2024
    Review
  18. Article
  19. Article
  20. Alchemical Free Energy Calculations on Membrane-Associated Proteins.Journal of chemical theory and computation · 2023
    Review

253 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Amanda L StoufferDepartment of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Rudresh Acharya
David Salom
Anna S Levine
Luigi Di Costanzo
Cinque S Soto
Valentina Tereshko
Vikas Nanda
Steven Stayrook
William F DeGrado
Rutgers, The State University of New Jersey · USUniversity of Pennsylvania · USUniversity of Chicago · US

Funding

Development of drugs that target the M2 proton channel from the influenza A VirusU01AI074571 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2008 to 2012
$7.5M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Structures and Dynamics of Proton and Cation-Dependent Channels and TransportersR01GM088204 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HONG, MEI · 2009 to 2024
$4.8M
Structure of M2 Proton Channel from Influenza A VirusR01GM056423 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1997 to 2016
$4.5M
De novo design of alpha-helical bundlesR37GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2004 to 2013
$3.6M
DE NOVO DESIGN OF ALPHA HELICAL BUNDLESR01GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1996 to 2016
$2.4M
NIAID NIH HHS U01 AI074571NIGMS NIH HHS R01 GM054616NIGMS NIH HHS R01 GM056423NIGMS NIH HHS R01 GM088204NIGMS NIH HHS R37 GM054616NIGMS NIH HHS T32 GM008275
6 · The paper itself

Abstract

The M2 protein from influenza A virus is a pH-activated proton channel that mediates acidification of the interior of viral particles entrapped in endosomes. M2 is the target of the anti-influenza drugs amantadine and rimantadine; recently, resistance to these drugs in humans, birds and pigs has reached more than 90% (ref. 1). Here we describe the crystal structure of the transmembrane-spanning region of the homotetrameric protein in the presence and absence of the channel-blocking drug amantadine. pH-dependent structural changes occur near a set of conserved His and Trp residues that are involved in proton gating. The drug-binding site is lined by residues that are mutated in amantadine-resistant viruses. Binding of amantadine physically occludes the pore, and might also perturb the pK(a) of the critical His residue. The structure provides a starting point for solving the problem of resistance to M2-channel blockers.

Indexed as

AmantadineCrystallography, X-RayDrug Resistance, ViralHistidineHydrogen-Ion ConcentrationInfluenza A virusIon Channel GatingModels, MolecularProtein Structure, QuaternaryProtonsStructure-Activity RelationshipTryptophanViral Matrix ProteinsViroporin ProteinsAmantadineHistidineM2 protein, Influenza A virusProtonsTryptophanViral Matrix ProteinsViroporin Proteins

Identifiers

PMID18235504
PMCPMC3889492
OpenAlexW1980318325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.