ArticleGenome biology2008
Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data.
Article in Genome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- Repairing the in situ hybridization missing data in the hippocampus region by using a 3D residual U-Net model.Biomedical optics express · 2024Article
- Comparing the Expression of Genes Related to Serotonin (5-HT) in C57BL/6J Mice and Humans Based on Data Available at the Allen Mouse Brain Atlas and Allen Human Brain Atlas.Neurology research international · 2017Article
- A transcriptional signature of hub connectivity in the mouse connectome.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Cell-type-specific neuroanatomy of cliques of autism-related genes in the mouse brain.Frontiers in computational neuroscience · 2015Article
- Cell-type-based model explaining coexpression patterns of genes in the brain.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq.BMC genomics · 2014Article
- Methodological limitations in determining astrocytic gene expression.Frontiers in endocrinology · 2013Review
- Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas.Brain structure & function · 2013Article
- Neuron-Enriched Gene Expression Patterns are Regionally Anti-Correlated with Oligodendrocyte-Enriched Patterns in the Adult Mouse and Human Brain.Frontiers in neuroscience · 2013Article
- Localizing genes to cerebellar layers by classifying ISH images.PLoS computational biology · 2012Article
- Development of multigene expression signature maps at the protein level from digitized immunohistochemistry slides.PloS one · 2012Article
- Article
- A semiautomated approach for artefact removal in serial tissue cryosections.Journal of microscopy · 2011Article
- Relationships between gene expression and brain wiring in the adult rodent brain.PLoS computational biology · 2011Article
- Quantitative expression profile of distinct functional regions in the adult mouse brain.PloS one · 2011Article
- Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.Methods (San Diego, Calif.) · 2010Article
- A FRET-based assay for characterization of alternative splicing events using peptide nucleic acid fluorescence in situ hybridization.Nucleic acids research · 2009Article
- A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas.Bioinformatics (Oxford, England) · 2009Article
Corrections and comments
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the emergence of genome-wide colorimetric in situ hybridization (ISH) data sets such as the Allen Brain Atlas, it is important to understand the relationship between this gene expression modality and those derived from more quantitative based technologies. This study introduces a novel method for standardized relative quantification of colorimetric ISH signal that enables a large-scale cross-platform expression level comparison of ISH with two publicly available microarray brain data sources.
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Registered trials
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