Evidence map›Paper›PMID 18234093›Full record

ArticleBMC biochemistry2008

Thermal dependency of RAG1 self-association properties.

Pallabi De, Shuying Zhao, Lori M Gwyn, Leann J Godderz, Mandy M Peak, Karla K Rodgers

Open access · hybridAbstract read
In one paragraph

Article in BMC biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Pallabi DeDepartment of Biochemistry and Molecular Biology, The University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73190, USA. pallabi.de@umassmed.edu
Shuying Zhao
Lori M Gwyn
Leann J Godderz
Mandy M Peak
Karla K Rodgers
University of Oklahoma Health Sciences Center · US

Funding

Protein-DNA Interactions in V(D)J RecombinationR01AI054467 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI RODGERS, KARLA K · 2003 to 2007
$1.1M
NIAID NIH HHS AI-054467NIAID NIH HHS R01 AI054467
6 · The paper itself

Abstract

backgroundFunctional immunoglobulin and T cell receptor genes are produced in developing lymphocytes by V(D)J recombination. The initial site-specific DNA cleavage steps in this process are catalyzed by the V(D)J recombinase, consisting of RAG1 and RAG2, which is directed to appropriate DNA cleavage sites by recognition of the conserved recombination signal sequence (RSS). RAG1 contains both the active site and the RSS binding domains, although RAG2 is also required for DNA cleavage activity. An understanding of the physicochemical properties of the RAG proteins, their association, and their interaction with the RSS is not yet well developed.

resultsHere, we further our investigations into the self-association properties of RAG1 by demonstrating that despite the presence of multiple RAG1 oligomers, only the dimeric form maintains the ability to interact with RAG2 and the RSS. However, facile aggregation of the dimeric form at physiological temperature may render this protein inactive in the absence of RAG2. Upon addition of RAG2 at 37 degrees C, the preferentially stabilized V(D)J recombinase:RSS complex contains a single dimer of RAG1.

conclusionTogether these results confirm that the functional form of RAG1 in V(D)J recombination is in the dimeric state, and that its stability under physiological conditions likely requires complex formation with RAG2. Additionally, in future structural and functional studies of RAG1, it will be important to take into account the temperature-dependent self-association properties of RAG1 described in this study.

Indexed as

TemperatureCatalysisDimerizationDNA-Binding ProteinsDNA CleavageHomeodomain ProteinsProtein BindingProtein Structure, QuaternarySubstrate SpecificityVDJ RecombinasesDNA-Binding ProteinsHomeodomain ProteinsRAG-1 proteinVDJ Recombinases

Identifiers

PMID18234093
PMCPMC2270275
OpenAlexW2097346153

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.