Evidence map›Paper›PMID 18232717›Full record

ArticleBiochemistry2008

Structural analyses of the ankyrin repeat domain of TRPV6 and related TRPV ion channels.

Christopher B Phelps, Robert J Huang, Polina V Lishko, Ruiqi R Wang, Rachelle Gaudet

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 105 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. TRPV3: Structure, Diseases and Modulators.Molecules (Basel, Switzerland) · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Endothelial TRPV4 channels in lung edema and injury.Current topics in membranes · 2022
    Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Store-Operated CaInternational journal of molecular sciences · 2018
    Review
  17. Article
  18. Article
  19. X-ray crystallography of TRP channels.Channels (Austin, Tex.) · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Christopher B PhelpsDepartment of Molecular and Cellular Biology, Harvard University, 7 Divinity Avenue, Cambridge, Massachusetts 01238, USA.
Robert J Huang
Polina V Lishko
Ruiqi R Wang
Rachelle Gaudet
Harvard University · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Structure and Function of TRPV Ion ChannelsR01GM081340 · NIGMS · HARVARD UNIVERSITY · PI GAUDET, RACHELLE · 2008 to 2012
$1.6M
NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIGMS NIH HHS R01 GM081340
6 · The paper itself

Abstract

Transient receptor potential (TRP) proteins are cation channels composed of a transmembrane domain flanked by large N- and C-terminal cytoplasmic domains. All members of the vanilloid family of TRP channels (TRPV) possess an N-terminal ankyrin repeat domain (ARD). The ARD of mammalian TRPV6, an important regulator of calcium uptake and homeostasis, is essential for channel assembly and regulation. The 1.7 A crystal structure of the TRPV6-ARD reveals conserved structural elements unique to the ARDs of TRPV proteins. First, a large twist between the fourth and fifth repeats is induced by residues conserved in all TRPV ARDs. Second, the third finger loop is the most variable region in sequence, length and conformation. In TRPV6, a number of putative regulatory phosphorylation sites map to the base of this third finger. Size exclusion chromatography and crystal packing indicate that the TRPV6-ARD does not assemble as a tetramer and is monomeric in solution. Adenosine triphosphate-agarose and calmodulin-agarose pull-down assays show that the TRPV6-ARD does not interact with either ligand, indicating a different functional role for the TRPV6-ARD than in the paralogous thermosensitive TRPV1 channel. Similar biochemical findings are also presented for the highly homologous mammalian TRPV5-ARD. The implications of the structural and biochemical data on the role of the ankyrin repeats in different TRPV channels are discussed.

Indexed as

Ankyrin RepeatAdenosine TriphosphateAmino Acid SequenceAnimalsCalmodulinConserved SequenceCrystallography, X-RayDimerizationHumansMiceModels, MolecularProtein BindingProtein Structure, SecondarySequence Homology, Amino AcidTemperatureTRPV Cation ChannelsAdenosine TriphosphateCalmodulinTRPV6 channelTRPV Cation Channels

Identifiers

PMID18232717
PMCPMC3006163
OpenAlexW1998976313

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.