Evidence map›Paper›PMID 18230720›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Atypical nicotinic agonist bound conformations conferring subtype selectivity.

Motohiro Tomizawa, David Maltby, Todd T Talley, Kathleen A Durkin, Katalin F Medzihradszky, Alma L Burlingame, Palmer Taylor, John E Casida

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
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  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Insight into the Binding Mode of Agonists of the Nicotinic Acetylcholine Receptor from Calculated Electron Densities.Chemphyschem : a European journal of chemical physics and physical chemistry · 2015
    Article
  13. Effects of neonicotinoids and fipronil on non-target invertebrates.Environmental science and pollution research international · 2015
    Review
  14. Systemic insecticides (neonicotinoids and fipronil): trends, uses, mode of action and metabolites.Environmental science and pollution research international · 2015
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Motohiro TomizawaEnvironmental Chemistry and Toxicology Laboratory, Department of Environmental Science, Policy and Management, University of California, Berkeley, CA 94720-3112, USA.
David Maltby
Todd T Talley
Kathleen A Durkin
Katalin F Medzihradszky
Alma L Burlingame
Palmer Taylor
John E Casida
University of California, Berkeley · USUniversity of California, San Francisco · USUniversity of Montana · US

Funding

YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SZOKA, FRANCIS C. · 1985 to 2011
$24.1M
KINETICS OF DRUG MACROMOLECULE COMPLEX FORMATIONR37GM018360 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, PALMER WILLIAM · 1999 to 2008
$5.7M
CHOLINERGIC INSECTICIDE TOXICOLOGYR01ES008424 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CASIDA, JOHN E · 1998 to 2006
$1.5M
PURCHASE OF LTQ FT-ICR HYBRID MASS SPECTROMETER: (HEI) PROTEOMICSS10RR019934 · NCRR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BURLINGAME, ALMA L · 2004 to 2004
$1.0M
Alpha Neurotoxin Probes of Nicotinic AChRF32NS043063 · NINDS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI TALLEY, TODD T · 2002 to 2004
$134k
NCRR NIH HHS P41 RR001614NCRR NIH HHS RR001614NCRR NIH HHS RR015084NCRR NIH HHS RR019934NCRR NIH HHS S10 RR019934NIEHS NIH HHS R01 ES008424NIEHS NIH HHS R01 ES08424NIGMS NIH HHS R37 GM018360NIGMS NIH HHS R37-GM18360NINDS NIH HHS F32 NS043063NINDS NIH HHS UO1-NS05846
6 · The paper itself

Abstract

The nicotinic acetylcholine (ACh) receptor (nAChR) plays a crucial role in excitatory neurotransmission and is an important target for drugs and insecticides. Diverse nAChR subtypes with various subunit combinations confer differential selectivity for nicotinic drugs. We investigated the subtype selectivity of nAChR agonists by comparing two ACh-binding proteins (AChBPs) as structural surrogates with distinct pharmacological profiles [i.e., Lymnaea stagnalis (Ls) AChBP of low neonicotinoid and high nicotinoid sensitivities and Aplysia californica (Ac) AChBP of high neonicotinoid sensitivity] mimicking vertebrate and insect nAChR subtypes, respectively. The structural basis of subtype selectivity was examined here by photoaffinity labeling. Two azidoneonicotinoid probes in the Ls-AChBP surprisingly modified two distinct and distant subunit interface sites: loop F Y164 of the complementary or (-)-face subunit and loop C Y192 of the principal or (+)-face subunit, whereas three azidonicotinoid probes derivatized only Y192. Both the neonicotinoid and nicotinoid probes labeled Ac-AChBP at only one position at the interface between loop C Y195 and loop E M116. These findings were used to establish structural models of the two AChBP subtypes. In the Ac-AChBP, the neonicotinoids and nicotinoids are nestled in similar bound conformations. Intriguingly, for the Ls-AChBP, the neonicotinoids have two bound conformations that are inverted relative to each other, whereas nicotinoids appear buried in only one conserved conformation as seen for the Ac-AChBP subtype. Accordingly, the subtype selectivity is based on two disparate bound conformations of nicotinic agonists, thereby establishing an atypical concept for neonicotinoid versus nicotinoid selectivity between insect and vertebrate nAChRs.

Indexed as

Amino Acid SequenceAnimalsAplysiaBinding SitesHumansImidazolesLymnaeaMolecular ConformationMolecular Sequence DataNeonicotinoidsNicotinic AgonistsNitro CompoundsPhotoaffinity LabelsProtein ConformationPyridinesReceptors, NicotinicimidaclopridImidazolesNeonicotinoidsNicotinic AgonistsNitro CompoundsPhotoaffinity LabelsPyridinesReceptors, NicotinicthiaclopridThiazines

Identifiers

PMID18230720
PMCPMC2234212
OpenAlexW2042386825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.