Evidence map›Paper›PMID 18227433›Full record

ArticleProtein science : a publication of the Protein Society2008

Functional site profiling and electrostatic analysis of cysteines modifiable to cysteine sulfenic acid.

Freddie R Salsbury, Stacy T Knutson, Leslie B Poole, Jacquelyn S Fetrow

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 125 citations in OpenAlex.

  1. Proteasomal surveillance of exposed cysteines.bioRxiv : the preprint server for biology · 2026
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  11. The role of thiols in antioxidant systems.Free radical biology & medicine · 2019
    Review
  12. Article
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  16. Review
  17. An oxygen-sensitive toxin-antitoxin system.Nature communications · 2016
    Article
  18. Review
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Freddie R SalsburyDepartment of Physics, Wake Forest University, Winston-Salem, North Carolina 27109, USA.
Stacy T Knutson
Leslie B Poole
Jacquelyn S Fetrow
Wake Forest University · US

Funding

Profiling of Redox-Sensitive Signaling ProteinsR21CA112145 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI POOLE, LESLIE B · 2005 to 2006
$295k
NCI NIH HHS R21 CA112145
6 · The paper itself

Abstract

Cysteine sulfenic acid (Cys-SOH), a reversible modification, is a catalytic intermediate at enzyme active sites, a sensor for oxidative stress, a regulator of some transcription factors, and a redox-signaling intermediate. This post-translational modification is not random: specific features near the cysteine control its reactivity. To identify features responsible for the propensity of cysteines to be modified to sulfenic acid, a list of 47 proteins (containing 49 known Cys-SOH sites) was compiled. Modifiable cysteines are found in proteins from most structural classes and many functional classes, but have no propensity for any one type of protein secondary structure. To identify features affecting cysteine reactivity, these sites were analyzed using both functional site profiling and electrostatic analysis. Overall, the solvent exposure of modifiable cysteines is not different from the average cysteine. The combined sequence, structure, and electrostatic approaches reveal mechanistic determinants not obvious from overall sequence comparison, including: (1) pKaS of some modifiable cysteines are affected by backbone features only; (2) charged residues are underrepresented in the structure near modifiable sites; (3) threonine and other polar residues can exert a large influence on the cysteine pKa; and (4) hydrogen bonding patterns are suggested to be important. This compilation of Cys-SOH modification sites and their features provides a quantitative assessment of previous observations and a basis for further analysis and prediction of these sites. Agreement with known experimental data indicates the utility of this combined approach for identifying mechanistic determinants at protein functional sites.

Indexed as

Amino Acid SequenceBinding SitesCatalysisCysteineHydrogen BondingProteinsSequence AlignmentStatic ElectricitySulfenic AcidsCysteinecysteinesulfenic acidProteinsSulfenic Acids

Identifiers

PMID18227433
PMCPMC2222711
OpenAlexW2139419587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.