Evidence map›Paper›PMID 18227072›Full record

ArticleThe Journal of biological chemistry2008

The Caenorhabditis elegans K10C2.4 gene encodes a member of the fumarylacetoacetate hydrolase family: a Caenorhabditis elegans model of type I tyrosinemia.

Alfred L Fisher, Kathryn E Page, Gordon J Lithgow, Lindsey Nash

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.1field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  6. Review
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  9. Article
  10. Oxidative stress in aging: advances in proteomic approaches.Oxidative medicine and cellular longevity · 2014
    Review
  11. Article
  12. Article
  13. Improved vectors for selection of transgenic Caenorhabditis elegans.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  14. Article
  15. Relationship of electrophilic stress to aging.Free radical biology & medicine · 2011
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Alfred L FisherDepartment of Medicine, Division of Geriatric Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA. fishera@dom.pitt.edu
Kathryn E Page
Gordon J Lithgow
Lindsey Nash
Buck Institute for Research on Aging · USUniversity of Pittsburgh · US

Funding

Lifespan determination and stress response in C. elegansR01AG021069 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI LITHGOW, GORDON J. · 2002 to 2006
$2.4M
Comparative Biology of p53, Checkpoint and LongevityR01AG022868 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI LITHGOW, GORDON J. · 2003 to 2007
$1.9M
Dopamine, Tryosine, and their Metabolites in Aging in Neurodegenerative DiseaseK08AG028977 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FISHER, ALFRED L · 2006 to 2009
$756k
daf-12 Target Genes during C. elegans agingK08AG024414 · NIA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FISHER, ALFRED L · 2004 to 2005
$233k
NIA NIH HHS K08 AG024414NIA NIH HHS K08 AG 028977NIA NIH HHS K08 AG028977NIA NIH HHS R01 AG021069NIA NIH HHS R01 AG022868NIA NIH HHS R01 AG 21069NIA NIH HHS R01 AG 22868
6 · The paper itself

Abstract

In eukaryotes and many bacteria, tyrosine is degraded to produce energy via a five-step tyrosine degradation pathway. Mutations affecting the tyrosine degradation pathway are also of medical importance as mutations affecting enzymes in the pathway are responsible for type I, type II, and type III tyrosinemia. The most severe of these is type I tyrosinemia, which is caused by mutations affecting the last enzyme in the pathway, fumarylacetoacetate hydrolase (FAH). So far, tyrosine degradation in the nematode Caenorhabditis elegans has not been studied; however, genes predicted to encode enzymes in this pathway have been identified in several microarray, proteomic, and RNA interference (RNAi) screens as perhaps being involved in aging and the control of protein folding. We sought to identify and characterize the genes in the worm tyrosine degradation pathway as an initial step in understanding these findings. Here we describe the characterization of the K10C2.4, which encodes a homolog of FAH. RNAi directed against K10C2.4 produces a lethal phenotype consisting of death in young adulthood, extensive damage to the intestine, impaired fertility, and activation of oxidative stress and endoplasmic stress response pathways. This phenotype is due to alterations in tyrosine metabolism as increases in dietary tyrosine enhance it, and inhibition of upstream enzymes in tyrosine degradation with RNAi or genetic mutations reduces the phenotype. We also use our model to identify genes that suppress the damage produced by K10C2.4 RNAi in a pilot genetic screen. Our results establish worms as a model for the study of type I tyrosinemia.

Indexed as

AgingAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDisease Models, AnimalFertilityHydrolasesIntestinesMutationOxidative StressPhenotypeProtein FoldingRNA InterferenceTyrosineTyrosinemiasCaenorhabditis elegans ProteinsfumarylacetoacetaseHydrolasesTyrosine

Identifiers

PMID18227072
PMCPMC2431024
OpenAlexW1979568773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.