Evidence map›Paper›PMID 18224322›Full record

ArticleCurrent genetics2008

Recurrent invasion of mitochondrial group II introns in specimens of Pylaiella littoralis (brown alga), collected worldwide.

Kyosuke Ikuta, Hiroshi Kawai, Dieter G Müller, Takeshi Ohama

Abstract read
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In one paragraph

Article in Current genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Kyosuke IkutaDepartment of Biology, Osaka Kyoiku University, Kashiwara, Osaka 582-8582, Japan. ikuta@cc.osaka-kyoiku.ac.jp
Hiroshi Kawai
Dieter G Müller
Takeshi Ohama
Kobe University · JPKochi University of Technology · JPOsaka Kyoiku University · JPUniversity of Konstanz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitochondrial genome of a filamentous brown alga Pylaiella littoralis (strain CCMP 1907) has been reported to contain four group IIB introns in the LSU rRNA gene and three group IIA introns in the cox1 gene. We found extreme variability in the number of group II introns for these two genes by analyzing eight P. littoralis specimens collected at worldwide habitats. The first intron of the LSU rRNA gene from a specimen collected in France and the fourth intron from a specimen harvested in Japan exhibited an exceptionally long evolutionary distance when compared with the cognate introns found in P. littoralis specimens. Moreover, these introns harbored an intact or nearly intact tripartite ORF, suggesting they are the result of a recent invasion of cognate introns. Based on the fact that many of the target sites were intronless, we propose that opportunity of intron infection is the bottleneck step of the group II intron cycle which consists of invasion, degeneration, and complete loss from the target site.

Indexed as

Evolution, MolecularAmino Acid SequenceBase SequenceDNA, RibosomalElectron Transport Complex IVGenes, MitochondrialGeographyIntronsMitochondriaMitochondrial ProteinsMolecular Sequence DataPhaeophyceaePhylogenyPolymorphism, GeneticSequence AlignmentDNA, RibosomalElectron Transport Complex IVMitochondrial Proteins

Identifiers

PMID18224322
OpenAlexW2075588486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.