Evidence map›Paper›PMID 18223295›Full record

ArticleThe Journal of biological chemistry2008

Recruitment of ikaros to pericentromeric heterochromatin is regulated by phosphorylation.

Zafer Gurel, Tapani Ronni, Sam Ho, Jason Kuchar, Kimberly J Payne, Christoph W Turk, Sinisa Dovat

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. IKAROS Family Transcription Factors in Lymphocyte Differentiation and Function.Advances in experimental medicine and biology · 2024
    Review
  6. IKAROS in Acute Leukemia: A Positive Influencer or a Mean Hater?International journal of molecular sciences · 2023
    Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Sequence, Chromatin and Evolution of Satellite DNA.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Zafer GurelDepartment of Pediatrics, University of Wisconsin, Madison, WI 53792-4108, USA.
Tapani Ronni
Sam Ho
Jason Kuchar
Kimberly J Payne
Christoph W Turk
Sinisa Dovat
University of Wisconsin–Madison · USLoma Linda University · USMax Planck Institute of Psychiatry · DEMichigan State University · US

Funding

IL-7 in Human B1 and B2 Lymphocyte DifferentiationK01DK066163 · NIDDK · LOMA LINDA UNIVERSITY · PI PAYNE, KIMBERLY J · 2004 to 2008
$626k
The Role of Zinc Finger Genes in Cellular ProliferationK22CA111392 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI DOVAT, SINISA · 2005 to 2007
$488k
NCI NIH HHS K22 CA 111392NIDDK NIH HHS 5 K01 DK 066163
6 · The paper itself

Abstract

Ikaros encodes a zinc finger protein that is involved in heritable gene silencing. In hematopoietic cells, Ikaros localizes to pericentromeric heterochromatin (PC-HC) where it recruits its target genes, resulting in their activation or repression via chromatin remodeling. The function of Ikaros is controlled by post-translational modifications. CK2 kinase has been shown to phosphorylate Ikaros at its C terminus, affecting cell cycle progression. Using in vivo labeling of murine thymocytes followed by phosphopeptide mapping, we identified four novel Ikaros phosphorylation sites. Functional analysis of phosphomimetic mutants showed that the phosphorylation of individual amino acids determines the affinity of Ikaros toward probes derived from PC-HC. In vivo experiments demonstrated that targeting of Ikaros to PC-HC is regulated by phosphorylation. The ability of Ikaros to bind the upstream regulatory elements of its known target gene terminal deoxynucleotidyltransferase (TdT) was decreased by phosphorylation of two amino acids. In thymocytes, Ikaros acts as a repressor of the TdT gene. Induction of differentiation of thymocytes with phorbol 12-myristate 13-acetate plus ionomycin results in transcriptional repression of TdT expression. This process has been associated with increased binding of Ikaros to the upstream regulatory element of TdT. Phosphopeptide analysis of in vivo-labeled thymocytes revealed that Ikaros undergoes dephosphorylation during induction of thymocyte differentiation and that dephosphorylation is responsible for increased DNA binding affinity of Ikaros toward the TdT promoter. We propose a model whereby reversible phosphorylation of Ikaros at specific amino acids controls the subcellular localization of Ikaros as well as its ability to regulate TdT expression during thymocyte differentiation.

Indexed as

Amino AcidsAmino Acid SequenceAnimalsCasein Kinase IICell DifferentiationCell LineCentromereDNAHeterochromatinHumansIkaros Transcription FactorMiceMolecular Sequence DataPhosphorylationPromoter Regions, GeneticProtein BindingAmino AcidsCasein Kinase IIDNAHeterochromatinIkaros Transcription Factor

Identifiers

PMID18223295
PMCPMC2276389
OpenAlexW2005750341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.