Evidence map›Paper›PMID 18221266›Full record

ArticleMolecular microbiology2008

Requirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3.

Jae-Ho Yoo, Uttam L RajBhandary

Abstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Identification of theApplied and environmental microbiology · 2017
    Article
  9. An extended Shine-Dalgarno sequence in mRNA functionally bypasses a vital defect in initiator tRNA.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jae-Ho YooDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Uttam L RajBhandary

Funding

STRUCTURE/FUNCTION OF TRANSFER RIBONUCLEIC ACIDSR37GM017151 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI RAJBHANDARY, UTTAM L · 1997 to 2006
$3.6M
NIGMS NIH HHS R37 GM017151NIGMS NIH HHS R37-GM17151-38
6 · The paper itself

Abstract

Despite its importance in post-transcriptional regulation of polycistronic operons in Escherichia coli, little is known about the mechanism of translation re-initiation, which occurs when the same ribosome used to translate an upstream open reading frame (ORF) also translates a downstream ORF. To investigate translation re-initiation in Escherichia coli, we constructed a di-cistronic reporter in which a firefly luciferase gene was linked to a chloramphenicol acetyltransferase gene using a segment of the translationally coupled geneV-geneVII intercistronic region from M13 phage. With this reporter and mutant initiator tRNAs, we show that two of the unique properties of E. coli initiator tRNA - formylation of the amino acid attached to the tRNA and binding of the tRNA to the ribosomal P-site - are as important for re-initiation as for de novo initiation. Overexpression of IF2 or increasing the affinity of mutant initiator tRNA for IF2 enhanced re-initiation efficiency, suggesting that IF2 is required for efficient re-initiation. In contrast, overexpression of IF3 led to a marked decrease in re-initiation efficiency, suggesting that a 30S ribosome and not a 70S ribosome is used for translation re-initiation. Strikingly, overexpression of IF3 also blocked E. coli from acting as a host for propagation of M13 phage.

Indexed as

Peptide Chain Initiation, TranslationalBacteriophage M13Base SequenceChloramphenicol O-AcetyltransferaseEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGenes, ReporterLuciferases, FireflyMolecular Sequence DataNucleic Acid ConformationProkaryotic Initiation Factor-2Prokaryotic Initiation Factor-3RibosomesRNA, Transfer, MetChloramphenicol O-AcetyltransferaseEscherichia coli ProteinsLuciferases, FireflyProkaryotic Initiation Factor-2Prokaryotic Initiation Factor-3RNA, Transfer, Met

Identifiers

PMID18221266
PMCPMC2268962

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.