ReviewMolecular biotechnology2008
In silico characterization of proteins: UniProt, InterPro and Integr8.
Review in Molecular biotechnology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
24 citing papers in PubMed.
- NtCML19 Is Recruited by Tobacco to Interact With the Deacetylase Protein RsDN3377 of Rhizoctonia solani AG3-TB, Inhibiting Fungal Infection.Molecular plant pathology · 2025Article
- Mutation ofAntibiotics (Basel, Switzerland) · 2025Article
- Investigating diversity and similarity between CBM13 modules and ricin-B lectin domains using sequence similarity networks.BMC genomics · 2024Article
- The Role of theMicroorganisms · 2023Article
- Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy.International journal of molecular sciences · 2020Review
- Assessment of Genetic Diversity, Population Structure, and Evolutionary Relationship of Uncharacterized Genes in a Novel Germplasm Collection of Diploid and AllotetraploidInternational journal of molecular sciences · 2018Article
- Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy.Methods (San Diego, Calif.) · 2015Review
- Genome based analysis of type-I polyketide synthase and nonribosomal peptide synthetase gene clusters in seven strains of five representative Nocardia species.BMC genomics · 2014Article
- Article
- Male-specific region of the bovine Y chromosome is gene rich with a high transcriptomic activity in testis development.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria.Protein science : a publication of the Protein Society · 2013Article
- Analysis of the Protein phosphotome of Entamoeba histolytica reveals an intricate phosphorylation network.PloS one · 2013Article
- In silico prediction of antimalarial drug target candidates.International journal for parasitology. Drugs and drug resistance · 2012Article
- The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2012Article
- CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.Database : the journal of biological databases and curation · 2012Article
- Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies.PLoS computational biology · 2012Article
- Article
- Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.Database : the journal of biological databases and curation · 2011Article
- Bioinformatics and molecular modeling in glycobiology.Cellular and molecular life sciences : CMLS · 2010Review
- From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase.Cellular and molecular life sciences : CMLS · 2010Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
Nucleic acid sequences from genome sequencing projects are submitted as raw data, from which biologists attempt to elucidate the function of the predicted gene products. The protein sequences are stored in public databases, such as the UniProt Knowledgebase (UniProtKB), where curators try to add predicted and experimental functional information. Protein function prediction can be done using sequence similarity searches, but an alternative approach is to use protein signatures, which classify proteins into families and domains. The major protein signature databases are available through the integrated InterPro database, which provides a classification of UniProtKB sequences. As well as characterization of proteins through protein families, many researchers are interested in analyzing the complete set of proteins from a genome (i.e. the proteome), and there are databases and resources that provide non-redundant proteome sets and analyses of proteins from organisms with completely sequenced genomes. This article reviews the tools and resources available on the web for single and large-scale protein characterization and whole proteome analysis.
Indexed as
Identifiers
18219596What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.