ArticleBMC genomics2008
Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference.
Article in BMC genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed, 103 citations in OpenAlex.
- Genome wide comparative analysis of microsatellites in Bipolaris sorokiniana for diversity analysis and spot blotch disease diagnosis in wheat.World journal of microbiology & biotechnology · 2026Article
- Disordered but rhythmic-the role of intrinsic protein disorder in eukaryotic circadian timing.FEBS letters · 2026Review
- Origins of lineage-specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa.Molecular ecology · 2024Article
- Characterization and development of transcriptome-derived novel EST-SSR markers to assess genetic diversity in3 Biotech · 2023Article
- Comparative analysis of nineFrontiers in microbiology · 2023Article
- Microsatellite Variation in the Most Devastating Beetle Pests (Coleoptera: Curculionidae) of Agricultural and Forest Crops.International journal of molecular sciences · 2022Article
- Comprehensive analysis of complete chloroplast genome and phylogenetic aspects of ten Ficus species.BMC plant biology · 2022Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans.Scientific reports · 2022Article
- Genome-wideGene reports · 2021Article
- A Comparative Analyses of the Complete Mitochondrial Genomes of Fungal Endosymbionts inInternational journal of genomics · 2021Article
- Implications of genome simple sequence repeats signature in 983 Biotech · 2021Article
- Development of genome-wide polymorphic microsatellite markers for Trichinella spiralis.Parasites & vectors · 2020Article
- Article
- Genome-wide mining and comparative analysis of microsatellites in three macaque species.Molecular genetics and genomics : MGG · 2017Article
- Natural Variation of the Circadian Clock in Neurospora.Advances in genetics · 2017Review
- Article
- A Comparison of Microsatellites in PhytopathogenicFrontiers in microbiology · 2017Article
- Genome-wide In Silico Analysis, Characterization and Identification of Microsatellites in Spodoptera littoralis Multiple nucleopolyhedrovirus (SpliMNPV).Scientific reports · 2016Article
- A Comprehensive Characterization of Simple Sequence Repeats in the Sequenced Trichoderma Genomes Provides Valuable Resources for Marker Development.Frontiers in microbiology · 2016Article
- Comparative analysis of microsatellites in five different antagonistic Trichoderma species for diversity assessment.World journal of microbiology & biotechnology · 2016Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSimple sequence repeats (SSRs) have been successfully used for various genetic and evolutionary studies in eukaryotic systems. The eukaryotic model organism Neurospora crassa is an excellent system to study evolution and biological function of SSRs.
resultsWe identified and characterized 2749 SSRs of 963 SSR types in the genome of N. crassa. The distribution of tri-nucleotide (nt) SSRs, the most common SSRs in N. crassa, was significantly biased in exons. We further characterized the distribution of 19 abundant SSR types (AST), which account for 71% of total SSRs in the N. crassa genome, using a Poisson log-linear model. We also characterized the size variation of SSRs among natural accessions using Polymorphic Index Content (PIC) and ANOVA analyses and found that there are genome-wide, chromosome-dependent and local-specific variations. Using polymorphic SSRs, we have built linkage maps from three line-cross populations.
conclusionTaking our computational, statistical and experimental data together, we conclude that 1) the distributions of the SSRs in the sequenced N. crassa genome differ systematically between chromosomes as well as between SSR types, 2) the size variation of tri-nt SSRs in exons might be an important mechanism in generating functional variation of proteins in N. crassa, 3) there are different levels of evolutionary forces in variation of amino acid repeats, and 4) SSRs are stable molecular markers for genetic studies in N. crassa.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.