Evidence map›Paper›PMID 18215224›Full record

ArticleFEMS yeast research2008

Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response.

Virginia D Marks, Shannan J Ho Sui, Daniel Erasmus, George K van der Merwe, Jochen Brumm, Wyeth W Wasserman, Jennifer Bryan, Hennie J J van Vuuren

Open access · bronzeAbstract read
In one paragraph

Article in FEMS yeast research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 3 pooled it
24.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 3 syntheses or guidelines pooled it, 191 citations in OpenAlex.

  1. Guideline
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  4. Article
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  9. Heliyon · 2024
    Article
  10. Article
  11. Truth in wine yeast.Microbial biotechnology · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Possible Role for Allelic Variation in YeastFrontiers in microbiology · 2021
    Article
  17. Article
  18. Review
  19. Factors affecting yeast ethanol tolerance and fermentation efficiency.World journal of microbiology & biotechnology · 2020
    Review
  20. Differential Contribution of the Parental Genomes to aFrontiers in bioengineering and biotechnology · 2020
    Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Virginia D MarksWine Research Centre, University of British Columbia, Vancouver, Canada.
Shannan J Ho Sui
Daniel Erasmus
George K van der Merwe
Jochen Brumm
Wyeth W Wasserman
Jennifer Bryan
Hennie J J van Vuuren
University of British Columbia · CAUniversity of Guelph · CA

Funding

CIHR 64231CIHR 69153
6 · The paper itself

Abstract

In this study, genome-wide expression analyses were used to study the response of Saccharomyces cerevisiae to stress throughout a 15-day wine fermentation. Forty per cent of the yeast genome significantly changed expression levels to mediate long-term adaptation to fermenting grape must. Among the genes that changed expression levels, a group of 223 genes was identified, which was designated as fermentation stress response (FSR) genes that were dramatically induced at various points during fermentation. FSR genes sustain high levels of induction up to the final time point and exhibited changes in expression levels ranging from four- to 80-fold. The FSR is novel; 62% of the genes involved have not been implicated in global stress responses and 28% of the FSR genes have no functional annotation. Genes involved in respiratory metabolism and gluconeogenesis were expressed during fermentation despite the presence of high concentrations of glucose. Ethanol, rather than nutrient depletion, seems to be responsible for entry of yeast cells into the stationary phase.

Indexed as

Gene Expression ProfilingEthanolFermentationGene Expression Regulation, FungalGenome, FungalHeat-Shock ResponseOligonucleotide Array Sequence AnalysisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticWineEthanolSaccharomyces cerevisiae Proteins

Identifiers

PMID18215224
PMCPMC5065349
OpenAlexW2069317466

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.