Evidence map›Paper›PMID 18214467›Full record

ArticleImmunogenetics2008

Evolutionarily conserved and divergent regions of the autoimmune regulator (Aire) gene: a comparative analysis.

Mark Saltis, Michael F Criscitiello, Yuko Ohta, Matthew Keefe, Nikolaus S Trede, Ryo Goitsuka, Martin F Flajnik

Open access · greenAbstract readComparative Study
In one paragraph

Article in Immunogenetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Extrathymic AIRE-Expressing Cells: A Historical Perspective.Advances in experimental medicine and biology · 2024
    Article
  7. Article
  8. The amphibian immune system.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  9. Review
  10. Review
  11. Review
  12. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  13. Article
  14. Twenty Years of AIRE.Frontiers in immunology · 2018
    Review
  15. Microbiota and mucosal immunity in amphibians.Frontiers in immunology · 2015
    Review
  16. Article
  17. Aire's plant homeodomain(PHD)-2 is critical for induction of immunological tolerance.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Mark SaltisDepartment of Microbiology and Immunology, University of Maryland, Baltimore, MD 21201, USA.
Michael F Criscitiello
Yuko Ohta
Matthew Keefe
Nikolaus S Trede
Ryo Goitsuka
Martin F Flajnik
University of Maryland, Baltimore · USUniversity of Utah · USTokyo University of Science · JP

Funding

ONTOGENY AND PHYLOGENY OF THE MHCR01AI027877 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1995 to 2009
$3.2M
Origins of specialized Mucosal Lymphocyte Subsets and Immunoglobulin IsotypesK22AI073888 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI CRISCITIELLO, MICHAEL FREDERICK · 2008 to 2009
$270k
NIAID NIH HHS K22 AI073888NIAID NIH HHS R01 AI027877NIAID NIH HHS R01AI27877
6 · The paper itself

Abstract

During T cell differentiation, medullary thymic epithelial cells (MTEC) expose developing T cells to tissue-specific antigens. MTEC expression of such self-antigens requires the transcription factor autoimmune regulator (Aire). In mammals, defects in aire result in multi-tissue, T cell-mediated autoimmunity. Because the T cell receptor repertoire is randomly generated and extremely diverse in all jawed vertebrates, it is likely that an aire-dependent T cell tolerance mechanism also exists in nonmammalian vertebrates. We have isolated aire genes from animals in all gnathostome classes except the cartilaginous fish by a combination of molecular techniques and scanning of expressed sequence tags and genomic databases. The deduced amino acid sequences of Aire were compared among mouse, human, opossum, chicken, Xenopus, zebrafish, and pufferfish. The first of two plant homeodomains (PHD) in human Aire and regions associated with nuclear and cytoplasmic localization are evolutionarily conserved, while other domains are either absent or divergent in one or more vertebrate classes. Furthermore, the second zinc-binding domain previously named Aire PHD2 appears to have greater sequence similarity with Ring finger domains than to PHD domains. Point mutations in defective human aire genes are generally found in the most evolutionarily conserved regions of the protein. These findings reveal a very rapid evolution of certain regions of aire during vertebrate evolution and support the existence of an aire-dependent mechanism of T cell tolerance dating back at least to the emergence of bony fish.

Indexed as

Conserved SequenceEvolution, MolecularGenetic VariationAIRE ProteinAmino Acid SequenceAnimalsBlotting, NorthernChickensDNA-Binding ProteinsHumansMiceMolecular Sequence DataPhylogenyProtein Structure, TertiaryReverse Transcriptase Polymerase Chain ReactionRNA, MessengerAIRE ProteinDNA-Binding ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID18214467
PMCPMC7039057
OpenAlexW2096911497

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.