Evidence map›Paper›PMID 18213526›Full record

ReviewImmunologic research2008

An in depth analysis of the concept of "polyspecificity" assumed to characterize TCR/BCR recognition.

Melvin Cohn

Open access · greenAbstract readReview
In one paragraph

Review in Immunologic research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Repertoire-scale measures of antigen binding.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. A Conversation with Cohn on the Activation of CD4 T Cells.Scandinavian journal of immunology · 2015
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Epitope-specificity of recombinant antibodies reveals promiscuous peptide-binding properties.Protein science : a publication of the Protein Society · 2012
    Article
  9. Article
  10. The promise of the anti-idiotype concept.Frontiers in oncology · 2012
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 2 countries.

Melvin CohnConceptual Immunology Group, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA. cohn@salk.edu
Instituto Gulbenkian de Ciência · PT

Funding

EVOLUTIONARY MODELS OF THE IMMUNE SYSTEMR01RR007716 · NCRR · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI COHN, MELVIN · 1991 to 2010
$4.5M
NCRR NIH HHS R01 RR007716NCRR NIH HHS RR07716
6 · The paper itself

Abstract

A workshop group developed the concept of a "polyspecific" TCR/BCR in the framework of today's consensus model. They argue that the individual TCR/BCR combining site is composed of a packet of specificities randomly plucked from the repertoire, hence it is "polyspecific." This essay analyzes the conclusions of the workshop and suggests an alternative. "Polyspecificity" must be dissected into its two component parts, specificity and degeneracy. The TCR and the BCR must be treated differently because the TCR recognizes allele-specifically the MHC-encoded restricting element (R) that serves as the platform presenting peptide (P). Only the anti-P paratope of the TCR behaves analogously to the BCR paratope. The two paratopes are selected to recognize a shape-determinant referred to as an epitope or ligand. The paratope is functionally unispecific in recognition, not polyspecific, with respect to shape; it is degenerate in recognition with respect to chemistry. The recognized shape-determinant can be the product of many chemically different substances, peptide, carbohydrate, lipid, steroid, nucleic acid, etc. Such a degenerate set is functionally treated by the paratope as one shape/epitope/ligand and, in no sense, can a paratope recognizing such a degenerate set be described as "polyspecific." Degeneracy and specificity are concepts that must be distinguished. The two positions are analyzed in this essay, the experiments used to support the view that the paratope of the TCR/BCR is polyspecific, are reinterpreted, and an alternative framework with its accompanying nomenclature, is presented.

Indexed as

Models, ImmunologicalAnimalsAntigensBinding SitesBinding Sites, AntibodyCross ReactionsEpitopesHumansLigandsReceptors, Antigen, B-CellReceptors, Antigen, T-CellSelf ToleranceT-LymphocytesAntigensEpitopesLigandsReceptors, Antigen, B-CellReceptors, Antigen, T-Cell

Identifiers

PMID18213526
PMCPMC2892925
OpenAlexW2006229186

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.