Evidence map›Paper›PMID 18212012›Full record

ArticleBiophysical journal2008

Single particle image reconstruction of the human recombinant Kv2.1 channel.

Brian Adair, Rashmi Nunn, Shannon Lewis, Iain Dukes, Louis Philipson, Mark Yeager

Abstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Domain structure and conformational changes in rat KV2.1 ion channel.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2014
    Article
  4. Ionic mechanisms in pancreatic β cell signaling.Cellular and molecular life sciences : CMLS · 2014
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The domain and conformational organization in potassium voltage-gated ion channels.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2009
    Review
  12. Intracellular regions of potassium channels: Kv2.1 and heag.European biophysics journal : EBJ · 2009
    Review
  13. Interdomain cytoplasmic interactions govern the intracellular trafficking, gating, and modulation of the Kv2.1 channel.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Brian AdairThe Scripps Research Institute, Department of Cell Biology, La Jolla, California 92037, USA.
Rashmi Nunn
Shannon Lewis
Iain Dukes
Louis Philipson
Mark Yeager

Funding

MOLECULAR BASIS OF VIRAL PATHOGENESIST32AI007354 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 1989 to 2020
$5.2M
Structure and Dynamics of Gap Junction ChannelsR01HL048908 · NHLBI · UNIVERSITY OF VIRGINIA · PI YEAGER, MARK JAY · 1994 to 2013
$5.1M
POTASSIUM CHANNEL EXPRESSION IN PANCREATIC B CELLSR01DK048494 · NIDDK · UNIVERSITY OF CHICAGO · PI PHILIPSON, LOUIS H. · 1995 to 2011
$2.8M
NHLBI NIH HHS R01 HL048908NHLBI NIH HHS R01 HL48908NIAID NIH HHS AI-07354NIAID NIH HHS T32 AI007354NIDDK NIH HHS R01 DK048494
6 · The paper itself

Abstract

Kv2.1 channels are widely expressed in neuronal and endocrine cells and generate slowly activating K+ currents, which contribute to repolarization in these cells. Kv2.1 is expressed at high levels in the mammalian brain and is a major component of the delayed rectifier current in the hippocampus. In addition, Kv2.1 channels have been implicated in the regulation of membrane repolarization, cytoplasmic calcium levels, and insulin secretion in pancreatic beta-cells. They are therefore an important drug target for the treatment of Type II diabetes mellitus. We used electron microscopy and single particle image analysis to derive a three-dimensional density map of recombinant human Kv2.1. The tetrameric channel is egg-shaped with a diameter of approximately 80 A and a long axis of approximately 120 A. Comparison to known crystal structures of homologous domains allowed us to infer the location of the cytoplasmic and transmembrane assemblies. There is a very good fit of the Kv1.2 crystal structure to the assigned transmembrane assembly of Kv2.1. In other low-resolution maps of K+ channels, the cytoplasmic N-terminal and transmembrane domains form separate rings of density. In contrast, Kv2.1 displays contiguous density that connects the rings, such that there are no large windows between the channel interior and the cytoplasmic space. The crystal structure of KcsA is thought to be in a closed conformation, and the good fit of the KcsA crystal structure to the Kv2.1 map suggests that our preparations of Kv2.1 may also represent a closed conformation. Substantial cytoplasmic density is closely associated with the T1 tetramerization domain and is ascribed to the approximately 184 kDa C-terminal regulatory domains within each tetramer.

Indexed as

AnimalsBiophysicsCell MembraneCHO CellsCricetinaeCricetulusCrystallography, X-RayCytoplasmHumansImage Processing, Computer-AssistedMicroscopy, ElectronMolecular ConformationProtein Structure, TertiaryRecombinant ProteinsShab Potassium ChannelsKCNB1 protein, humanRecombinant ProteinsShab Potassium Channels

Identifiers

PMID18212012
PMCPMC2257891

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.