ArticleFunctional & integrative genomics2008
Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q.
Article in Functional & integrative genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 57 citations in OpenAlex.
- Genome-wide analysis of heavy metal ATPases (HMAs) in Poaceae species and their potential role against copper stress in Triticum aestivum.Scientific reports · 2023Article
- Expansion and evolutionary patterns of GDSL-type esterases/lipases in Rosaceae genomes.Functional & integrative genomics · 2018Article
- Systematic analysis and comparison of the PHD-Finger gene family in Chinese pear (Pyrus bretschneideri) and its role in fruit development.Functional & integrative genomics · 2018Article
- Genome-wide analysis of wheat calcium ATPases and potential role of selected ACAs and ECAs in calcium stress.BMC plant biology · 2017Article
- The wheat Phs-A1 pre-harvest sprouting resistance locus delays the rate of seed dormancy loss and maps 0.3 cM distal to the PM19 genes in UK germplasm.Journal of experimental botany · 2016Article
- Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).BMC plant biology · 2014Article
- Dynamic development of starch granules and the regulation of starch biosynthesis in Brachypodium distachyon: comparison with common wheat and Aegilops peregrina.BMC plant biology · 2014Article
- The α-gliadin genes from Brachypodium distachyon L. provide evidence for a significant gap in the current genome assembly.Functional & integrative genomics · 2014Article
- Conserved synteny-based anchoring of the barley genome physical map.Functional & integrative genomics · 2013Article
- Comparative high-resolution mapping of the wax inhibitors Iw1 and Iw2 in hexaploid wheat.PloS one · 2013Article
- The WRKY transcription factor family in Brachypodium distachyon.BMC genomics · 2012Article
- Identification and comparative mapping of a powdery mildew resistance gene derived from wild emmer (Triticum turgidum var. dicoccoides) on chromosome 2BS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon.PloS one · 2012Article
- Fine mapping and comparative genomics integration of two quantitative trait loci controlling resistance to powdery mildew in a Spanish barley landrace.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat.Proceedings of the National Academy of Sciences of the United States of America · 2011Article
- The domestication syndrome genes responsible for the major changes in plant form in the Triticeae crops.Plant & cell physiology · 2011Review
- Compact genomes and complex evolution in the genus Brachypodium.Chromosoma · 2011Article
- The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice.Functional & integrative genomics · 2010Article
- Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley.Functional & integrative genomics · 2010Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Brachypodium, a wild temperate grass with a small genome, was recently proposed as a new model organism for the large-genome grasses. In this study, we evaluated gene content and microcolinearity between diploid wheat (Triticum monococcum), Brachypodium sylvaticum, and rice at a local genomic region harboring the major wheat domestication gene Q. Gene density was much lower in T. monococcum (one per 41 kb) because of gene duplication and an abundance of transposable elements within intergenic regions as compared to B. sylvaticum (one per 14 kb) and rice (one per 10 kb). For the Q gene region, microcolinearity was more conserved between wheat and rice than between wheat and Brachypodium because B. sylvaticum contained two genes apparently not present within the orthologous regions of T. monococcum and rice. However, phylogenetic analysis of Q and leukotriene A-4 hydrolase-like gene orthologs, which were colinear among the three species, showed that Brachypodium is more closely related to wheat than rice, which agrees with previous studies. We conclude that Brachypodium will be a useful tool for gene discovery, comparative genomics, and the study of evolutionary relationships among the grasses but will not preclude the need to conduct large-scale genomics experiments in the Triticeae.
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