Evidence map›Paper›PMID 18209955›Full record

ArticlePlant molecular biology2008

Snowy cotyledon 2: the identification of a zinc finger domain protein essential for chloroplast development in cotyledons but not in true leaves.

Verónica Albrecht, Anke Ingenfeld, Klaus Apel

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The variegatedComputational and structural biotechnology journal · 2024
    Article
  5. Article
  6. Article
  7. Fine Mapping and Candidate Gene Analysis ofFrontiers in plant science · 2022
    Article
  8. Genes for Yield Stability in Tomatoes.Advanced genetics (Hoboken, N.J.) · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. International journal of molecular sciences · 2020
    Article
  13. Article
  14. Photosynthetic characterization of transgenicPlant signaling & behavior · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Introducing anFrontiers in plant science · 2019
    Article
  20. Chloroplast vesicle transport.Photosynthesis research · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Verónica AlbrechtInstitute of Plant Sciences, Swiss Federal Institute of Technology (ETH), Zurich, Switzerland. valbrecht@ethz.ch
Anke Ingenfeld
Klaus Apel
ETH Zurich · CHÉcole Polytechnique Fédérale de Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In cotyledons of etiolated seedlings light-dependent transformation of etioplasts to chloroplasts marks the transition from heterotrophic to autotrophic growth. Genetic factors required for this developmental step were identified by isolating mutants of Arabidopsis thaliana that were impaired in chloroplast development in cotyledons but not in true leaves. Several mutants with chlorophyll-deficient cotyledons were isolated and dubbed snowy cotyledon (sco). Here we describe the identification and detailed characterization of the snowy cotyledon 2 mutant. The mutated SCO2 gene was identified using a map-based cloning strategy. SCO2 was shown to encode a novel protein which contains a single DnaJ-like zinc finger domain. The SCO2 protein fused to GFP was shown to be present in chloroplasts. Inactivation of SCO2 has almost no detectable impact on the levels of transcripts encoding plastid-specific proteins but leads to a significant reduction of plastid protein levels. Even though transcripts of SCO2 have been found ubiquitously in green tissues as well as in roots phenotypic changes due to SCO2 inactivation are confined to cotyledons. The cotyledons in embryos of sco2 are unaffected in their chloroplast biogenesis. Upon precocious germination seedlings of sco2 and wild type are indistinguishable. The SCO2 mutation affects chloroplast biogenesis only at the end of dormancy during seed germination. The transition from heterotrophic to autotrophic growth is dramatically impaired in sco2 when seedlings were kept in the dark for more than 5 days prior to light exposure.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsChloroplastsCotyledonElectrophoresis, Polyacrylamide GelMolecular Sequence DataMutationPlant LeavesPlant ProteinsReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidZinc FingersArabidopsis ProteinsPlant Proteins

Identifiers

PMID18209955
OpenAlexW2017556072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.