Evidence map›Paper›PMID 18203720›Full record

ArticleThe Journal of biological chemistry2008

Diversity in tissue expression, substrate binding, and SCF complex formation for a lectin family of ubiquitin ligases.

Kevin A Glenn, Rick F Nelson, Hsiang M Wen, Adam J Mallinger, Henry L Paulson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 83 citations in OpenAlex.

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  14. PROTAC targeted protein degraders: the past is prologue.Nature reviews. Drug discovery · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Kevin A GlennVeterans Affairs Medical Center, Iowa City, Iowa 52242, USA. kevin-glenn@uiowa.edu
Rick F Nelson
Hsiang M Wen
Adam J Mallinger
Henry L Paulson
Kansas City University · USMichigan Medicine · USVeterans Health Administration · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Analysis of Fbx2 Family of Ubiquitin LigasesR01NS047535 · NINDS · UNIVERSITY OF IOWA · PI PAULSON, HENRY L · 2004 to 2007
$1.3M
Role of Fb2, a brain-specific F-box, in GERADF30NS047872 · NINDS · UNIVERSITY OF IOWA · PI NELSON, RICK F. · 2004 to 2007
$95k
NIGMS NIH HHS T32 GM007337NINDS NIH HHS NS047872NINDS NIH HHS R01 NS47535-01
6 · The paper itself

Abstract

Post-translational modification of proteins regulates many cellular processes. Some modifications, including N-linked glycosylation, serve multiple functions. For example, the attachment of N-linked glycans to nascent proteins in the endoplasmic reticulum facilitates proper folding, whereas retention of high mannose glycans on misfolded glycoproteins serves as a signal for retrotranslocation and ubiquitin-mediated proteasomal degradation. Here we examine the substrate specificity of the only family of ubiquitin ligase subunits thought to target glycoproteins through their attached glycans. The five proteins comprising this FBA family (FBXO2, FBXO6, FBXO17, FBXO27, and FBXO44) contain a conserved G domain that mediates substrate binding. Using a variety of complementary approaches, including glycan arrays, we show that each family member has differing specificity for glycosylated substrates. Collectively, the F-box proteins in the FBA family bind high mannose and sulfated glycoproteins, with one FBA protein, FBX044, failing to bind any glycans on the tested arrays. Site-directed mutagenesis of two aromatic amino acids in the G domain demonstrated that the hydrophobic pocket created by these amino acids is necessary for high affinity glycan binding. All FBA proteins co-precipitated components of the canonical SCF complex (Skp1, Cullin1, and Rbx1), yet FBXO2 bound very little Cullin1, suggesting that FBXO2 may exist primarily as a heterodimer with Skp1. Using subunit-specific antibodies, we further demonstrate marked divergence in tissue distribution and developmental expression. These differences in substrate recognition, SCF complex formation, and tissue distribution suggest that FBA proteins play diverse roles in glycoprotein quality control.

Indexed as

Gene Expression Regulation, EnzymologicAnimalsCell LineChlorocebus aethiopsF-Box ProteinsGlycoproteinsHumansHydrophobic and Hydrophilic InteractionsLectinsMannoseMiceModels, BiologicalMultigene FamilyPolysaccharidesProtein BindingSKP Cullin F-Box Protein LigasesF-Box ProteinsGlycoproteinsLectinsMannosePolysaccharidesSKP Cullin F-Box Protein Ligases

Identifiers

PMID18203720
PMCPMC2442310
OpenAlexW2007169599

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.