Evidence map›Paper›PMID 18201723›Full record

ArticleJournal of molecular biology2008

Poising of Escherichia coli RNA polymerase and its release from the sigma 38 C-terminal tail for osmY transcription.

Adam Z Rosenthal, Youngbae Kim, Jay D Gralla

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. RpoS and the bacterial general stress response.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Adam Z RosenthalDepartment of Chemistry and Biochemistry and the Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA.
Youngbae Kim
Jay D Gralla
University of California, Los Angeles · US

Funding

MECHANISMS OF REPRESSION IN BACTERIAR01GM035754 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRALLA, JAY D · 1986 to 2006
$2.0M
NIGMS NIH HHS R01 GM035754PHS HHS USPHS35754
6 · The paper itself

Abstract

Bacteria must adapt their transcription to overcome the osmotic stress associated with the gastrointestinal tract of their host. This requires the sigma 38 (rpoS) form of RNA polymerase. Here, chromatin immunoprecipitation experiments show that activation is associated with a poise-and-release mechanism in vivo. A C-terminal tail unique among sigma factors is shown to be required for in vivo recruitment of RNA polymerase to the promoter region prior to osmotic shock. C-terminal domain tail-dependent transcription in vivo can be mimicked by using the intracellular signaling molecule potassium glutamate in vitro. Following signaling, the barrier to elongation into the gene body is overcome and RNA polymerase is released to produce osmY mRNA.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAmino Acid SequenceChromatin ImmunoprecipitationConserved SequenceDNA-Directed RNA PolymerasesEscherichia coliEscherichia coli ProteinsGlutamatesHoloenzymesMolecular Sequence DataOsmotic PressurePeriplasmic Binding ProteinsPlasmidsPromoter Regions, GeneticProtein BindingDNA-Directed RNA PolymerasesEscherichia coli ProteinsGlutamatesHoloenzymesosmY protein, E coliPeriplasmic Binding ProteinsRNA polymerase Esigma(38)Sigma Factor

Identifiers

PMID18201723
PMCPMC2390820
OpenAlexW1970189289

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.