ArticleGenome biology2008
CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships.
Article in Genome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Systematic discovery of circular permutations across the protein universe using CIRPIN.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- SplitSeek-Pro: accurate prediction of splittable sites on protein structures.Nature communications · 2026Article
- CIRPIN: Learning Circular Permutation-Invariant Representations to Uncover Putative Protein Homologs.bioRxiv : the preprint server for biology · 2025Article
- Detection of circular permutations by Protein Language Models.Computational and structural biotechnology journal · 2025Article
- Ribonuclease T2 represents a distinct circularly permutated version of the BECR RNases.Protein science : a publication of the Protein Society · 2023Article
- SeqCP: A sequence-based algorithm for searching circularly permuted proteins.Computational and structural biotechnology journal · 2023Article
- CirPred, the first structure modeling and linker design system for circularly permuted proteins.BMC bioinformatics · 2021Article
- A secondary structure-based position-specific scoring matrix applied to the improvement in protein secondary structure prediction.PloS one · 2021Article
- An ancient evolutionary connection between Ribonuclease A and EndoU families.RNA (New York, N.Y.) · 2020Article
- A simple strategy to enhance the speed of protein secondary structure prediction without sacrificing accuracy.PloS one · 2020Article
- Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis.Nucleic acids research · 2018Article
- The Structure of a Thermophilic Kinase Shapes Fitness upon Random Circular Permutation.ACS synthetic biology · 2016Article
- An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data.Algorithms for molecular biology : AMB · 2016Article
- Detection of circular permutations within protein structures using CE-CP.Bioinformatics (Oxford, England) · 2015Article
- Engineering of Yarrowia lipolytica lipase Lip8p by circular permutation to alter substrate and temperature characteristics.Journal of industrial microbiology & biotechnology · 2014Article
- Network analysis of circular permutations in multidomain proteins reveals functional linkages for uncharacterized proteins.Cancer informatics · 2014Article
- Article
- CPred: a web server for predicting viable circular permutations in proteins.Nucleic acids research · 2012Article
- Intra-chain 3D segment swapping spawns the evolution of new multidomain protein architectures.Journal of molecular biology · 2012Article
- Deciphering the preference and predicting the viability of circular permutations in proteins.PloS one · 2012Article
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Circular permutation of a protein can be visualized as if the original amino- and carboxyl termini were linked and new ones created elsewhere. It has been well-documented that circular permutants usually retain native structures and biological functions. Here we report CPSARST (Circular Permutation Search Aided by Ramachandran Sequential Transformation) to be an efficient database search tool. In this post-genomics era, when the amount of protein structural data is increasing exponentially, it provides a new way to rapidly detect novel relationships among proteins.
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