Evidence map›Paper›PMID 18197698›Full record

ArticleAnalytical chemistry2008

Determination of sphingosine kinase activity for cellular signaling studies.

Katherine J Lee, Simon M Mwongela, Sumith Kottegoda, Laura Borland, Allison R Nelson, Christopher E Sims, Nancy L Allbritton

Abstract read
In one paragraph

Article in Analytical chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Sphingolipids in adipose tissue: What's tipping the scale?Advances in biological regulation · 2018
    Review
  6. Review
  7. Article
  8. Analysis of sphingosine kinase activity in single natural killer cells from peripheral blood.Integrative biology : quantitative biosciences from nano to macro · 2015
    Article
  9. Article
  10. Separation of fluorescently labeled phosphoinositides and sphingolipids by capillary electrophoresis.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2012
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Capillary electrophoresis in bioanalysis.Analytical chemistry · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Katherine J LeeDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, USA.
Simon M Mwongela
Sumith Kottegoda
Laura Borland
Allison R Nelson
Christopher E Sims
Nancy L Allbritton

Funding

Rapid Analysis of Signaling in Adherent CellsR01EB004597 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L. · 2005 to 2008
$1.4M
NIBIB NIH HHS R01 EB004597
6 · The paper itself

Abstract

Regulation of sphingosine and sphingosine-1-phosphate concentrations is of growing interest due to their importance in cellular signal transduction. Furthermore, new pharmaceutical agents moderating the intracellular and extracellular levels of sphingosine metabolites are showing promise in preclinical and clinical trials. In the present work, a quantitative assay relying on capillary electrophoresis with laser-induced fluorescence detection was developed to measure the interconversion of sphingosine and sphingosine-1-phosphate. The assay was demonstrated to be capable of determining the in vitro activity of both kinase and phosphatase using purified enzymes. The KM of sphingosine kinase for its fluorescently labeled substrate was 38 +/- 18 microM with a Vmax of 0.4 +/- 0.2 microM/min and a kcat of 3900 s-1. Pharmacologic inhibition of sphingosine kinase in a concentration-dependent manner was also demonstrated. Moreover, the fluorescent substrate was shown to be readily taken up by mammalian cells making it possible to study the endogenous activity of sphingosine kinase activity in living cells. The method was readily adaptable to the use of either bulk cell lysates or very small numbers of intact cells. This new methodology provides enhancements over standard methods in sensitivity, quantification, and manpower for both in vitro and cell-based assays.

Indexed as

AnimalsCell Line, TumorFluoresceinLysophospholipidsMiceMolecular StructurePhosphorylationPhosphotransferases (Alcohol Group Acceptor)Reproducibility of ResultsSignal TransductionSphingosineSphingosine KinaseStaining and LabelingTime FactorsFluoresceinLysophospholipidsPhosphotransferases (Alcohol Group Acceptor)Sphingosinesphingosine 1-phosphateSphingosine Kinase

Identifiers

PMID18197698
PMCPMC2853780

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.