ArticleJournal of bacteriology2008
Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation.
Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
34 citing papers in PubMed, 87 citations in OpenAlex.
- Tissue-specific experimental evolution reveals adaptive trade-offs in the plant vascular pathogen Clavibacter michiganensis.The ISME journal · 2026Article
- Clavibacter nebraskensis causing Goss's wilt of maize: Five decades of detaining the enemy in the New World.Molecular plant pathology · 2023Review
- Bacterial ring rot of potato caused by Clavibacter sepedonicus: A successful example of defeating the enemy under international regulations.Molecular plant pathology · 2022Article
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- Article
- Comparative Genome Analyses ofFrontiers in microbiology · 2021Article
- Comparative Genomics and Phylogenetic Analyses Suggest Several Novel Species within the GenusApplied and environmental microbiology · 2020Article
- Pest categorisation ofEFSA journal. European Food Safety Authority · 2019Article
- Detection ofThe plant pathology journal · 2018Article
- Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses.International journal of systematic and evolutionary microbiology · 2018Article
- Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association ofFrontiers in plant science · 2018Article
- Comparative genomics of Clavibacter michiganensis subspecies, pathogens of important agricultural crops.PloS one · 2017Article
- (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans.Scientific reports · 2016Article
- A Proteomic Study ofProteomes · 2015Article
- Validation and Application of a Real-time PCR Protocol for the Specific Detection and Quantification of Clavibacter michiganensis subsp. sepedonicus in Potato.The plant pathology journal · 2015Article
- Complete Genome Sequence of Clavibacter michiganensis subsp. insidiosus R1-1 Using PacBio Single-Molecule Real-Time Technology.Genome announcements · 2015Article
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- Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle.BMC genomics · 2014Article
- Complete Genome of Clavibacter michiganensis subsp. sepedonicusis Siphophage CN1A.Genome announcements · 2013Article
- Engineering unnatural variants of plantazolicin through codon reprogramming.ACS chemical biology · 2013Article
Corrections and comments
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Authors and funding
14 authors at 4 institutions in 2 countries.
Funding
Abstract
Clavibacter michiganensis subsp. sepedonicus is a plant-pathogenic bacterium and the causative agent of bacterial ring rot, a devastating agricultural disease under strict quarantine control and zero tolerance in the seed potato industry. This organism appears to be largely restricted to an endophytic lifestyle, proliferating within plant tissues and unable to persist in the absence of plant material. Analysis of the genome sequence of C. michiganensis subsp. sepedonicus and comparison with the genome sequences of related plant pathogens revealed a dramatic recent evolutionary history. The genome contains 106 insertion sequence elements, which appear to have been active in extensive rearrangement of the chromosome compared to that of Clavibacter michiganensis subsp. michiganensis. There are 110 pseudogenes with overrepresentation in functions associated with carbohydrate metabolism, transcriptional regulation, and pathogenicity. Genome comparisons also indicated that there is substantial gene content diversity within the species, probably due to differential gene acquisition and loss. These genomic features and evolutionary dating suggest that there was recent adaptation for life in a restricted niche where nutrient diversity and perhaps competition are low, correlated with a reduced ability to exploit previously occupied complex niches outside the plant. Toleration of factors such as multiplication and integration of insertion sequence elements, genome rearrangements, and functional disruption of many genes and operons seems to indicate that there has been general relaxation of selective pressure on a large proportion of the genome.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.