ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2007
Characterization of the soybean genome using EST-derived microsatellite markers.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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53 citing papers in PubMed, 139 citations in OpenAlex.
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- Mapping QTLs Controlling Soybean Rust Disease Resistance in Chiang Mai 5, an Induced Mutant Cultivar.Genes · 2022Article
- Genetic and Genomic Resources for Soybean Breeding Research.Plants (Basel, Switzerland) · 2022Review
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- Mapping and validation of a major QTL for primary root length of soybean seedlings grown in hydroponic conditions.BMC genomics · 2021Article
- Mapping soybeanBreeding science · 2020Article
- Genetic mapping of powdery mildew resistance genes in soybean by high-throughput genome-wide sequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Efficient QTL detection of flowering date in a soybean RIL population using the novel restricted two-stage multi-locus GWAS procedure.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Development of a high-density linkage map and chromosome segment substitution lines for Japanese soybean cultivar Enrei.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Identification and dissection of single seed weight QTLs by analysis of seed yield components in soybean.Breeding science · 2018Article
- Identification of Putative Precursor Genes for the Biosynthesis of Cannabinoid-Like Compound inFrontiers in plant science · 2018Article
- Quantitative trait locus mapping under irrigated and drought treatments based on a novel genetic linkage map in mungbean (Vigna radiata L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Mapping quantitative trait loci for root development under hypoxia conditions in soybean (Glycine max L. Merr.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Article
- A soybean quantitative trait locus that promotes flowering under long days is identified as FT5a, a FLOWERING LOCUS T ortholog.Journal of experimental botany · 2016Article
- Quantitative trait locus mapping of soybean maturity gene E5.Breeding science · 2016Article
- Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.BMC genomics · 2016Article
- Development of Novel SSR Markers for Flax (Frontiers in plant science · 2016Article
- Characterization of Global Transcriptome Using Illumina Paired-End Sequencing and Development of EST-SSR Markers in Two Species of Gynostemma (Cucurbitaceae).Molecules (Basel, Switzerland) · 2015Article
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Authors and funding
13 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We generated a high-density genetic linkage map of soybean using expressed sequence tag (EST)-derived microsatellite markers. A total of 6920 primer pairs (10.9%) were designed to amplify simple sequence repeats (SSRs) from 63,676 publicly available non-redundant soybean ESTs. The polymorphism of two parent plants, the Japanese cultivar 'Misuzudaizu' and the Chinese line 'Moshidou Gong 503', were examined using 10% polyacrylamide gel electrophoresis. Primer pairs showing polymorphism were then used for genotyping 94 recombinant inbred lines (RILs) derived from a cross between the parents. In addition to previously reported markers, 680 EST-derived microsatellite markers were selected and subjected to linkage analysis. As a result, 935 marker loci were mapped successfully onto 20 linkage groups, which totaled 2700.3 cM in length; 693 loci were detected using the 668 EST-derived microsatellite markers developed in this study, the other 242 loci were detected with 105 RFLP markers, 136 genome-derived microsatellite markers, and one phenotypic marker. We examined allelic variation among 23 soybean cultivars/lines and a wild soybean line using 668 mapped EST-derived microsatellite markers (corresponding to 686 marker loci), in order to determine the transferability of the markers among soybean germplasms. A limited degree of macrosynteny was observed at the segmental level between the genomes of soybean and the model legume Lotus japonicus, which suggests that considerable genome shuffling occurred after separation of the species and during establishment of the paleopolyploid soybean genome.
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