Evidence map›Paper›PMID 18190256›Full record

ArticleThe Journal of infectious diseases2007

Ex vivo analysis of human T lymphotropic virus type 1-specific CD4+ cells by use of a major histocompatibility complex class II tetramer composed of a neurological disease-susceptibility allele and its immunodominant peptide.

Hirohisa Nose, Ryuji Kubota, Nilufer P Seth, Peter K Goon, Yuetsu Tanaka, Shuji Izumo, Koichiro Usuku, Yoshiro Ohara, Kai W Wucherpfennig, Charles R M Bangham and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Cytomegalovirus (CMV) Epitope-Specific CD4Journal of immunology (Baltimore, Md. : 1950) · 2017
    Article
  4. Article
  5. Review
  6. MHC class II tetramers.Journal of immunology (Baltimore, Md. : 1950) · 2012
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Hirohisa NoseDepartment of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan.
Ryuji Kubota
Nilufer P Seth
Peter K Goon
Yuetsu Tanaka
Shuji Izumo
Koichiro Usuku
Yoshiro Ohara
Kai W Wucherpfennig
Charles R M Bangham
Mitsuhiro Osame
Mineki Saito
Kagoshima University · JPImperial College London · GBKanazawa Medical University · JPDana-Farber Cancer Institute · USHarvard University · USKumamoto University Hospital · JPUniversity of the Ryukyus · JP

Funding

Rebuilding Immunity for SurvivalP01CA100265 · NCI · DANA-FARBER CANCER INSTITUTE · PI NADLER, LEE MARSHALL · 2003 to 2005
$7.2M
NCI NIH HHS P01 CA100265
6 · The paper itself

Abstract

HLA-DRB1*0101 is associated with susceptibility to human T lymphotropic virus type 1 (HTLV-1)-associated myelopathy/tropical spastic paraparesis (HAM/TSP). Here, we used a synthetic tetramer of DRB1*0101 and its epitope peptide to analyze HTLV-1-specific CD4(+) T cells ex vivo. The frequency of tetramer(+)CD4(+) T cells was significantly greater in patients with HAM/TSP than in healthy HTLV-1 carriers (HCs) at a given proviral load and correlated with HTLV-1 tax messenger RNA expression in HCs but not in patients with HAM/TSP. These cells displayed an early to intermediate effector memory phenotype and were preferentially infected by HTLV-1. T cell receptor gene analyses of 2 unrelated DRB1*0101-positive patients with HAM/TSP showed similar Vbeta repertoires and amino acid motifs in complementarity-determining region 3. Our data suggest that efficient clonal expansion of virus-specific CD4(+) T cells in patients with HAM/TSP does not simply reflect higher viral burden but rather reflects a rapid turnover caused by preferential infection and/or in vivo stimulation by major histocompatibility complex-peptide complexes.

Indexed as

AllelesAmino Acid SequenceCD4-Positive T-LymphocytesFemaleGenes, pXGenetic Predisposition to DiseaseHistocompatibility Antigens Class IIHLA-A AntigensHLA-DRB1 ChainsHTLV-I AntigensHumansHuman T-lymphotropic virus 1Immunodominant EpitopesLeukocytes, MononuclearMaleMiddle AgedHistocompatibility Antigens Class IIHLA-A AntigensHLA-DRB1*01:01 antigenHLA-DRB1 ChainsHTLV-I AntigensImmunodominant EpitopesReceptors, Antigen, T-CellRNA, Messenger

Identifiers

PMID18190256
PMCPMC4515963
OpenAlexW2136961327

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.