Evidence map›Paper›PMID 18188181›Full record

ArticleEMBO reports2008

A structural basis for the allosteric regulation of non-hydrolysing UDP-GlcNAc 2-epimerases.

Lucas M Velloso, Shyam S Bhaskaran, Raymond Schuch, Vincent A Fischetti, C Erec Stebbins

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  5. Article
  6. Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A.Acta crystallographica. Section F, Structural biology communications · 2020
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  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lucas M VellosoLaboratory of Structural Microbiology, The Rockfeller University, New York, NY 10021, USA.
Shyam S Bhaskaran
Raymond Schuch
Vincent A Fischetti
C Erec Stebbins
Rockefeller University · US

Funding

Genetics and Cell BiologyT32GM066699 · NIGMS · ROCKEFELLER UNIVERSITY · PI STRICKLAND, SIDNEY · 2004 to 2021
$7.6M
Pathogen-specific drug targets for weaponized bacteriaU19AI056510 · NIAID · ROCKEFELLER UNIVERSITY · PI FISCHETTI, VINCENT A. · 2003 to 2007
$6.2M
NIAID NIH HHS AI056510NIAID NIH HHS U19 AI056510NIGMS NIH HHS GM066699NIGMS NIH HHS T32 GM066699
6 · The paper itself

Abstract

The non-hydrolysing bacterial UDP-N-acetylglucosamine 2-epimerase (UDP-GlcNAc 2-epimerase) catalyses the conversion of UDP-GlcNAc into UDP-N-acetylmannosamine, an intermediate in the biosynthesis of several cell-surface polysaccharides. This enzyme is allosterically regulated by its substrate UDP-GlcNAc. The structure of the ternary complex between the Bacillus anthracis UDP-GlcNAc 2-epimerase, its substrate UDP-GlcNAc and the reaction intermediate UDP, showed direct interactions between UDP and its substrate, and between the complex and highly conserved enzyme residues, identifying the allosteric site of the enzyme. The binding of UDP-GlcNAc is associated with conformational changes in the active site of the enzyme. Kinetic data and mutagenesis of the highly conserved UDP-GlcNAc-interacting residues confirm their importance in the substrate binding and catalysis of the enzyme. This constitutes the first example to our knowledge, of an enzymatic allosteric activation by direct interaction between the substrate and the allosteric activator.

Indexed as

Allosteric RegulationBacillus anthracisBinding SitesCarbohydrate ConformationCarbohydrate EpimerasesCatalysisCrystallography, X-RayHydrolysisKineticsModels, MolecularProtein ConformationStructure-Activity RelationshipSubstrate SpecificityUridine Diphosphate N-AcetylglucosamineCarbohydrate EpimerasesUDP acetylglucosamine-2-epimeraseUridine Diphosphate N-Acetylglucosamine

Identifiers

PMID18188181
PMCPMC2246411
OpenAlexW2170191635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.