Evidence map›Paper›PMID 18187505›Full record

ArticleNucleic acids research2008

Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein.

Jeffrey M Chen, Huiping Ren, James E Shaw, Yu Jing Wang, Ming Li, Andrea S Leung, Vanessa Tran, Nicolas M Berbenetz, Dana Kocíncová, Christopher M Yip and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

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  18. Elimination of PknL and MSMEG_4242 inCell surface (Amsterdam, Netherlands) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jeffrey M ChenDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Huiping Ren
James E Shaw
Yu Jing Wang
Ming Li
Andrea S Leung
Vanessa Tran
Nicolas M Berbenetz
Dana Kocíncová
Christopher M Yip
Jean-Marc Reyrat
Jun Liu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lsr2 is a small, basic protein present in Mycobacterium and related actinomycetes. Recent studies suggest that Lsr2 is a regulatory protein involved in multiple cellular processes including cell wall biosynthesis and antibiotic resistance. However, the underlying molecular mechanisms remain unknown. In this article, we performed biochemical studies of Lsr2-DNA interactions and structure-function analysis of Lsr2. Analysis by atomic force microscopy revealed that Lsr2 has the ability to bridge distant DNA segments, suggesting that Lsr2 plays a role in the overall organization and compactness of the nucleoid. Mutational analysis identified critical residues and selection of dominant negative mutants demonstrated that both DNA binding and protein oligomerization are essential for the normal functions of Lsr2 in vivo. These results provide strong evidence that Lsr2 is a DNA bridging protein, which represents the first identification of such proteins in bacteria phylogenetically distant from the Enterobacteriaceae. DNA bridging by Lsr2 also provides a mechanism of transcriptional regulation by Lsr2.

Indexed as

AT Rich SequenceBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA, CircularMicroscopy, Atomic ForceMutationMycobacterium tuberculosisBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA, Circular

Identifiers

PMID18187505
PMCPMC2367712

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.