Evidence map›Paper›PMID 18184660›Full record

ArticleThe Journal of biological chemistry2008

The crystal structure of N-acetyl-L-glutamate synthase from Neisseria gonorrhoeae provides insights into mechanisms of catalysis and regulation.

Dashuang Shi, Vatsala Sagar, Zhongmin Jin, Xiaolin Yu, Ljubica Caldovic, Hiroki Morizono, Norma M Allewell, Mendel Tuchman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Production of l-glutamate family amino acids inSynthetic and systems biotechnology · 2021
    Review
  6. Article
  7. Article
  8. The N-Acetylglutamate Synthase Family: Structures, Function and Mechanisms.International journal of molecular sciences · 2015
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Dashuang ShiChildren's Research Institute, Children's National Medical Center, The George Washington University, Washington, DC 20010, USA. dshi@cnmcresearch.org
Vatsala Sagar
Zhongmin Jin
Xiaolin Yu
Ljubica Caldovic
Hiroki Morizono
Norma M Allewell
Mendel Tuchman
Children's National · USGeorge Washington University · USUniversity of Maryland, College Park · USArgonne National Laboratory · US

Funding

THERAPY FOR HYPERAMMONEMIA WITH GENETICALLY ENGINEERED BACTERIAP01HD032652 · NICHD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WHITLEY, CHESTER B. · 1995 to 2016
$14.5M
N-acetylglutamate Synthase: Structure, Function & DefectsR01DK064913 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI CALDOVIC, LJUBICA MORIZONO · 2003 to 2017
$4.9M
Structural Studies of NAGSK01DK067935 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI SHI, DASHUANG · 2004 to 2006
$373k
N-acetylglutamate synthase function in regulation of ureagenesisR56DK064913 · NIDDK · CHILDREN'S RESEARCH INSTITUTE · PI CALDOVIC, LJUBICA MORIZONO · 2020 to 2020
$223k
NICHD NIH HHS HD 32652NICHD NIH HHS P01 HD032652NIDDK NIH HHS DK064913NIDDK NIH HHS DK067935NIDDK NIH HHS K01 DK067935NIDDK NIH HHS R01 DK064913NIDDK NIH HHS R56 DK064913
6 · The paper itself

Abstract

The crystal structures of N-acetylglutamate synthase (NAGS) in the arginine biosynthetic pathway of Neisseria gonorrhoeae complexed with acetyl-CoA and with CoA plus N-acetylglutamate have been determined at 2.5- and 2.6-A resolution, respectively. The monomer consists of two separately folded domains, an amino acid kinase (AAK) domain and an N-acetyltransferase (NAT) domain connected through a 10-A linker. The monomers assemble into a hexameric ring that consists of a trimer of dimers with 32-point symmetry, inner and outer ring diameters of 20 and 100A, respectively, and a height of 110A(.) Each AAK domain interacts with the cognate domains of two adjacent monomers across two 2-fold symmetry axes and with the NAT domain from a second monomer of the adjacent dimer in the ring. The catalytic sites are located within the NAT domains. Three active site residues, Arg316, Arg425, and Ser427, anchor N-acetylglutamate in a position at the active site to form hydrogen bond interactions to the main chain nitrogen atoms of Cys356 and Leu314, and hydrophobic interactions to the side chains of Leu313 and Leu314. The mode of binding of acetyl-CoA and CoA is similar to other NAT family proteins. The AAK domain, although catalytically inactive, appears to bind arginine. This is the first reported crystal structure of any NAGS, and it provides insights into the catalytic function and arginine regulation of NAGS enzymes.

Indexed as

AcetyltransferasesAllosteric SiteAmino-Acid N-AcetyltransferaseArginineCatalysisCrystallography, X-RayCysteineLeucineModels, BiologicalMolecular ConformationNeisseria gonorrhoeaeProtein BindingProtein Structure, TertiarySerineStereoisomerismAcetyltransferasesAmino-Acid N-AcetyltransferaseArginineCysteineLeucineSerine

Identifiers

PMID18184660
PMCPMC4099063
OpenAlexW2079004081

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.