Evidence map›Paper›PMID 18183401›Full record

ArticlePlant cell reports2008

Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars.

Aryadeep Roychoudhury, Bhaskar Gupta, Dibyendu N Sengupta

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  3. Genomics and transcriptomics to protect rice (Frontiers in plant science · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Aryadeep RoychoudhuryDepartment of Botany, Bose Institute, Kolkata, 700009, West Bengal, India.
Bhaskar Gupta
Dibyendu N Sengupta
Bose Institute · INUniversity of Calcutta · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Specific cis-acting elements, identified in the stress-regulated promoters, can respond to the changes in the levels of abscisic acid. Most of our previous works were done with ACGT-containing typical abscisic acid responsive elements (ABREs) but not with non-ACGT, GC-rich sequences also present in such promoters. The current communication shows a comparative analysis performed on the binding of rice nuclear proteins, together with the purified transcription factor OSBZ8, to the cis-elements in the promoters of Rab16A (Motif I/Motif II), Osem (Motif A-1/Motif B) and Em (4X ABRE/2X ABRC). Our data show that the extent of binding of nuclear protein from salt-tolerant rice to both typical ABREs and non-ACGT, ABRE-like sequences such as Motif IIa, is much higher than that from salt-sensitive rice and occurs constitutively, i.e., even with the protein from unstressed plants. The complex formation is low and inducible only by salt in the salt-sensitive variety. While Motif I bind to a single 38 kDa protein, Motif IIa bind to two polypeptides of 38 and 29 kDa. We also show here that the activation and binding of OSBZ8 to the upstream regions of salt-inducible genes depends on its phosphorylated state. The novelty of our work is that it shows rice OSBZ8 as the prime factor interacting with both typical ABRE(s) and ABRE-like sequences. To our knowledge, this is also the first report for the detection and identification of Motif IIa (non-ACGT, coupling element-like)-binding factor(s) from rice and their expression pattern in different rice cultivars.

Indexed as

Gene Expression Regulation, PlantAbscisic AcidHeat-Shock ProteinsNuclear ProteinsOryzaPhosphorylationPlant ProteinsPromoter Regions, GeneticProtein BindingResponse ElementsSeedlingsTrans-ActivatorsAbscisic AcidHeat-Shock ProteinsNuclear ProteinsOsem protein, Oryza sativaPlant Proteinsrab 16B protein, Oryza sativaTrans-Activators

Identifiers

PMID18183401
OpenAlexW1998362870

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.