Evidence map›Paper›PMID 18182026›Full record

ArticleThe Plant journal : for cell and molecular biology2008

Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.).

Mi-Ok Woo, Tae-Ho Ham, Hyeon-So Ji, Min-Seon Choi, Wenzhu Jiang, Sang-Ho Chu, Rihua Piao, Joong-Hyoun Chin, Jung-A Kim, Bong Soo Park and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Structure and Expression Analysis ofInternational journal of molecular sciences · 2023
    Article
  7. OverexpressingPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. RiceFrontiers in plant science · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Dissecting the Seed Maturation and Germination Processes in the Non-OrthodoxInternational journal of molecular sciences · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Mi-Ok WooDepartment of Plant Science and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Tae-Ho Ham
Hyeon-So Ji
Min-Seon Choi
Wenzhu Jiang
Sang-Ho Chu
Rihua Piao
Joong-Hyoun Chin
Jung-A Kim
Bong Soo Park
Hak Soo Seo
Nam-Soo Jwa
Susan McCouch
Hee-Jong Koh
Seoul National University · KRSejong University · KRCornell University · USInternational Rice Research Institute · PHNational Institute of Agricultural Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A rice genic male-sterility gene ms-h is recessive and has a pleiotropic effect on the chalky endosperm. After fine mapping, nucleotide sequencing analysis of the ms-h gene revealed a single nucleotide substitution at the 3'-splice junction of the 14th intron of the UDP-glucose pyrophosphorylase 1 (UGPase1; EC2.7.7.9) gene, which causes the expression of two mature transcripts with abnormal sizes caused by the aberrant splicing. An in vitro functional assay showed that both proteins encoded by the two abnormal transcripts have no UGPase activity. The suppression of UGPase by the introduction of a UGPase1-RNAi construct in wild-type plants nearly eliminated seed set because of the male defect, with developmental retardation similar to the ms-h mutant phenotype, whereas overexpression of UGPase1 in ms-h mutant plants restored male fertility and the transformants produced T(1) seeds that segregated into normal and chalky endosperms. In addition, both phenotypes were co-segregated with the UGPase1 transgene in segregating T(1) plants, which demonstrates that UGPase1 has functional roles in both male sterility and the development of a chalky endosperm. Our results suggest that UGPase1 plays a key role in pollen development as well as seed carbohydrate metabolism.

Indexed as

Amino Acid SequenceBase SequenceGene Expression Regulation, PlantMolecular Sequence DataOryzaPlant InfertilityPlants, Genetically ModifiedPollenRNA InterferenceSeedsUTP-Glucose-1-Phosphate UridylyltransferaseUTP-Glucose-1-Phosphate Uridylyltransferase

Identifiers

PMID18182026
PMCPMC2327258
OpenAlexW2148655377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.