Evidence map›Paper›PMID 18178629›Full record

ArticleJournal of medical genetics2008

A frame-shift mutation of PMS2 is a widespread cause of Lynch syndrome.

M Clendenning, L Senter, H Hampel, K Lagerstedt Robinson, S Sun, D Buchanan, M D Walsh, M Nilbert, J Green, J Potter and 2 more

Abstract read
In one paragraph

Article in Journal of medical genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. BiallelicGenes · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. PMS2 monoallelic mutation carriers: the known unknown.Genetics in medicine : official journal of the American College of Medical Genetics · 2016
    Review
  13. Article
  14. Prostate cancer incidence in males with Lynch syndrome.Genetics in medicine : official journal of the American College of Medical Genetics · 2014
    Article
  15. Article
  16. Article
  17. An American founder mutation in MLH1.International journal of cancer · 2012
    Article
  18. Article
  19. Prevalence of alterations in DNA mismatch repair genes in patients with young-onset colorectal cancer.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

M ClendenningComprehensive Cancer Center, The Ohio State University, Columbus, Ohio, USA.
L Senter
H Hampel
K Lagerstedt Robinson
S Sun
D Buchanan
M D Walsh
M Nilbert
J Green
J Potter
A Lindblom
A de la Chapelle
The Ohio State University · USKarolinska Institutet · SEQIMR Berghofer Medical Research Institute · AUCancer Genetics (United States) · USFred Hutch Cancer Center · USLund University · SEMemorial University of Newfoundland · CA

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
AUSTRALASIAN COLORECTAL CANCER FAMILY REGISTRYU01CA097735 · NCI · UNIVERSITY OF MELBOURNE · PI HOPPER, JOHN L · 2002 to 2007
$6.9M
INCIDENCE AND MOLECULAR SCREENING FOR HEREDITARY CANCERR01CA067941 · NCI · OHIO STATE UNIVERSITY · PI DE LA CHAPELLE, ALBERT · 2000 to 2004
$2.9M
NATURAL HISTORY AND INCIDENCE OF HEREDITARY COLON CANCERU01CA067941 · NCI · UNIVERSITY OF HELSINKI · PI DE LA CHAPELLE, ALBERT · 1996 to 1999
–
NCI NIH HHS CA16058NCI NIH HHS CA67941NCI NIH HHS CA96011NCI NIH HHS P30 CA016058NCI NIH HHS R01 CA067941NCI NIH HHS U01 CA067941NCI NIH HHS U01 CA097735
6 · The paper itself

Abstract

backgroundWhen compared to the other mismatch repair genes involved in Lynch syndrome, the identification of mutations within PMS2 has been limited (<2% of all identified mutations), yet the immunohistochemical analysis of tumour samples indicates that approximately 5% of Lynch syndrome cases are caused by PMS2. This disparity is primarily due to complications in the study of this gene caused by interference from pseudogene sequences.

methodsUsing a recently developed method for detecting PMS2 specific mutations, we have screened 99 patients who are likely candidates for PMS2 mutations based on immunohistochemical analysis.

resultsWe have identified a frequently occurring frame-shift mutation (c.736_741del6ins11) in 12 ostensibly unrelated Lynch syndrome patients (20% of patients we have identified with a deleterious mutation in PMS2, n = 61). These individuals all display the rare allele (population frequency <0.05) at a single nucleotide polymorphism (SNP) in exon 11, and have been shown to possess a short common haplotype, allowing us to calculate that the mutation arose around 1625 years ago (65 generations; 95% confidence interval 22 to 120).

conclusionAncestral analysis indicates that this mutation is enriched in individuals with British and Swedish ancestry. We estimate that there are >10 000 carriers of this mutation in the USA alone. The identification of both the mutation and the common haplotype in one Swedish control sample (n = 225), along with evidence that Lynch syndrome associated cancers are rarer than expected in the probands' families, would suggest that this is a prevalent mutation with reduced penetrance.

Indexed as

Adenosine TriphosphatasesAdultAgedBase SequenceColorectal Neoplasms, Hereditary NonpolyposisDNA-Binding ProteinsDNA Mutational AnalysisDNA, NeoplasmDNA Repair EnzymesFemaleFrameshift MutationGenetic TestingGenome, HumanHaplotypesHumansMaleAdenosine TriphosphatasesDNA-Binding ProteinsDNA, NeoplasmDNA Repair EnzymesMismatch Repair Endonuclease PMS2PMS2 protein, human

Identifiers

PMID18178629
PMCPMC4339871
OpenAlexW2152653959

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.