Evidence map›Paper›PMID 18177728›Full record

ArticleCell metabolism2008

Interferon regulatory factors are transcriptional regulators of adipogenesis.

Jun Eguchi, Qing-Wu Yan, Dustin E Schones, Michael Kamal, Chung-Hsin Hsu, Michael Q Zhang, Gregory E Crawford, Evan D Rosen

Open access · bronzeAbstract read
In one paragraph

Article in Cell metabolism, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 136 citations in OpenAlex.

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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jun EguchiDivision of Endocrinology and Metabolism, Beth Israel Deaconess Medical Center, Boston, MA 02215, USA.
Qing-Wu Yan
Dustin E Schones
Michael Kamal
Chung-Hsin Hsu
Michael Q Zhang
Gregory E Crawford
Evan D Rosen
Beth Israel Deaconess Medical Center · USBroad Institute · USCold Spring Harbor Laboratory · USDuke University · US

Funding

PROTEIN CODING GENES IN THE HUMAN GENOMER01HG001696 · NHGRI · UNIVERSITY OF TEXAS DALLAS · PI ZHANG, MICHAEL Q · 1997 to 2010
$5.1M
Novel Transcriptional Pathways in AdipogenesisR01DK063906 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ROSEN, EVAN D · 2003 to 2007
$1.8M
Complications of elevated transferrin-iron saturationR21DK063996 · NIDDK · UNIVERSITY OF WASHINGTON · PI KOWDLEY, KRIS · 2004 to 2004
$152k
NHGRI NIH HHS HG01696NHGRI NIH HHS R01 HG001696NIDDK NIH HHS R01 DK063906NIDDK NIH HHS R01 DK63996NIDDK NIH HHS R21 DK063996
6 · The paper itself

Abstract

We have sought to identify transcriptional pathways in adipogenesis using an integrated experimental and computational approach. Here, we employ high-throughput DNase hypersensitivity analysis to find regions of altered chromatin structure surrounding key adipocyte genes. Regions that display differentiation-dependent changes in hypersensitivity were used to predict binding sites for proteins involved in adipogenesis. A high-scoring example was a binding motif for interferon regulatory factor (IRF) family members. Expression of all nine mammalian IRF mRNAs is regulated during adipogenesis, and several bind to the identified motifs in a differentiation-dependent manner. Furthermore, several IRF proteins repress differentiation. This analysis suggests an important role for IRF proteins in adipocyte biology and demonstrates the utility of this approach in identifying cis- and trans-acting factors not previously suspected to participate in adipogenesis.

Indexed as

Gene Expression Regulation3T3-L1 CellsAdipocytesAdipogenesisAnimalsBase SequenceBinding SitesCell DifferentiationChromatin ImmunoprecipitationDeoxyribonucleasesElectrophoretic Mobility Shift AssayInterferon Regulatory FactorsMicePolymerase Chain ReactionProtein BindingTranscription, GeneticDeoxyribonucleasesInterferon Regulatory Factors

Identifiers

PMID18177728
PMCPMC2278019
OpenAlexW1971279197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.