Evidence map›Paper›PMID 18175314›Full record

ArticleProteins2008

The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway.

Yang Qiu, Rongguang Zhang, T Andrew Binkowski, Valentina Tereshko, Andrzej Joachimiak, Anthony Kossiakoff

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Structural analysis of YcdY, a member of the redox-enzyme maturation protein family.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Structure of the twin-arginine signal-binding protein DmsD from Escherichia coli.Acta crystallographica. Section F, Structural biology and crystallization communications · 2009
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yang QiuDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, Illinois 60637, USA.
Rongguang Zhang
T Andrew Binkowski
Valentina Tereshko
Andrzej Joachimiak
Anthony Kossiakoff
University of Chicago · USJoint Center for Structural Genomics · USArgonne National Laboratory · US

Funding

The Midwest Center for Structural GenomicsU54GM074942 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ · 2005 to 2009
$51.0M
THE MIDWEST CENTER FOR STRUCTURAL GENOMICSP50GM062414 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ JOACHIMIAK · 2000 to 2004
$33.2M
NIGMS NIH HHS GM074942NIGMS NIH HHS GM62414NIGMS NIH HHS P50 GM062414NIGMS NIH HHS U54 GM074942
6 · The paper itself

Abstract

The DmsD protein is necessary for the biogenesis of dimethyl sulphoxide (DMSO) reductase in many prokaryotes. It performs a critical chaperone function initiated through its binding to the twin-arginine signal peptide of DmsA, the catalytic subunit of DMSO reductase. Upon binding to DmsD, DmsA is translocated to the periplasm via the so-called twin-arginine translocation (Tat) pathway. Here we report the 1.38 A crystal structure of the protein DmsD from Salmonella typhimurium and compare it with a close functional homolog, TorD. DmsD has an all-alpha fold structure with a notable helical extension located at its N-terminus with two solvent exposed hydrophobic residues. A major difference between DmsD and TorD is that TorD structure is a domain-swapped dimer, while DmsD exists as a monomer. Nevertheless, these two proteins have a number of common features suggesting they function by using similar mechanisms. A possible signal peptide-binding site is proposed based on structural similarities. Computational analysis was used to identify a potential GTP binding pocket on similar surfaces of DmsD and TorD structures.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularCrystallizationCrystallography, X-RayGuanosine TriphosphateModels, MolecularMolecular ChaperonesMolecular Sequence DataProtein Structure, SecondarySalmonella typhimuriumSequence AlignmentBacterial ProteinsGuanosine TriphosphateMolecular Chaperones

Identifiers

PMID18175314
PMCPMC2678857
OpenAlexW2065303259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.