Evidence map›Paper›PMID 18174332›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

D-loop formation by Brh2 protein of Ustilago maydis.

Nayef Mazloum, Qingwen Zhou, William K Holloman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  4. Unraveling the mechanism of BRCA2 in homologous recombination.Nature structural & molecular biology · 2011
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nayef MazloumDepartment of Microbiology and Immunology, Cornell University Weill Medical College, New York, NY 10065, USA.
Qingwen Zhou
William K Holloman
Cornell University · US

Funding

REC1 GENE CONTROLLING RECOMBINATION IN USTILAGOR01GM042482 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HOLLOMAN, WILLIAM K. · 1989 to 2013
$4.3M
Mechanisms of Brh2-Promoted Recombinatinal RepairR01GM079859 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HOLLOMAN, WILLIAM K. · 2007 to 2015
$2.8M
NIGMS NIH HHS GM42482NIGMS NIH HHS GM79859NIGMS NIH HHS R01 GM042482NIGMS NIH HHS R01 GM079859
6 · The paper itself

Abstract

Brh2, the ortholog of the BRCA2 tumor suppressor in Ustilago maydis, works hand in hand with Rad51 to promote repair of DNA by homologous recombination. Previous studies established that Brh2 can stimulate DNA strand exchange by enabling Rad51 nucleoprotein filament formation on replication protein A-coated ssDNA. But, more recently, it was noted that Brh2 has an inherent DNA annealing activity, raising the notion that it might have roles in recombination in addition to or beyond the mediator function. Here, we found that Brh2 can autonomously promote the formation of D-loops in reactions with plasmid DNA and homologous single-stranded oligonucleotides. The reaction differs from that catalyzed by Rad51 in having no requirement for cofactors or preloading phase on ssDNA. D-loop formation was most effective when Brh2 was mixed with plasmid DNA before addition of single-stranded oligomer. D-loop formation catalyzed by Rad51 was also enhanced when Brh2 was premixed with plasmid DNA. Brh2 rendered defective in Rad51 interaction by mutation in the BRC element was still capable of promoting D-loop formation. However, the mutant protein was unable to enhance the Rad51-catalyzed reaction. The results suggest a model in which Brh2 binding to plasmid DNA attracts and helps capture Rad51-coated ssDNA.

Indexed as

Gene Expression RegulationBRCA2 ProteinDNADNA-Binding ProteinsDNA, Single-StrandedEscherichia coliExoribonucleasesMolecular ConformationNucleic Acid ConformationPlasmidsProtein BindingProtein ConformationRad51 RecombinaseRecombination, GeneticSaccharomyces cerevisiae ProteinsUstilagoBRCA2 ProteinDNADNA-Binding ProteinsDNA, Single-StrandedDSS1 protein, S cerevisiaeExoribonucleasesRad51 RecombinaseSaccharomyces cerevisiae Proteins

Identifiers

PMID18174332
PMCPMC2206569
OpenAlexW1981672344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.