Evidence map›Paper›PMID 18165308›Full record

ArticleJournal of bacteriology2008

Regulation of circadian clock gene expression by phosphorylation states of KaiC in cyanobacteria.

Yoriko Murayama, Tokitaka Oyama, Takao Kondo

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Circadian transcriptional regulation by the posttranslational oscillator without de novo clock gene expression in Synechococcus.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Nonparametric entrainment of the in vitro circadian phosphorylation rhythm of cyanobacterial KaiC by temperature cycle.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  19. How a cyanobacterium tells time.Current opinion in microbiology · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Yoriko MurayamaDivision of Biological Science, Graduate School of Science, Nagoya University, Furo-cho 1, Chikusa-ku, Nagoya 464-8602, Japan.
Tokitaka Oyama
Takao Kondo
Nagoya University · JPJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Three clock proteins--KaiA, KaiB, and KaiC--have been identified as essential components of the circadian oscillator in cyanobacteria, and Kai-based chemical oscillation is thought to be the basic circadian timing mechanism in Synechococcus elongatus PCC 7942. Transcription and translation of kaiBC in cyanobacterial cells was quantitatively studied to elucidate how these processes are coupled to the chemical oscillator using a strain in which circadian oscillation is under the control of IPTG (isopropyl-beta-D-thiogalactopyranoside). The kinetics of repression of kaiBC promoter triggered by IPTG allowed estimation of transient response at 10 h. This response time is suitable for cyanobacterial transcription and/or translation to match with the Kai-based oscillator. Interestingly, kaiBC promoter activity and KaiC phosphorylation showed robust circadian rhythms, whereas trc promoter-driven kaiBC mRNA levels and KaiC accumulation were almost arrhythmic. These results indicate that cyanobacterial circadian rhythms can be generated even if kaiBC expression is constitutive. Moreover, there was a positive correlation between activation of the kaiBC promoter and an increase in the KaiC phosphorylation ratio in three rhythmic conditions. Based on these observations, it is likely that the KaiC phosphorylation ratio is the main factor in the activation of kaiBC promoter. Finally, we quantitatively compared the threshold level of phosphorylated KaiC for the repression or derepression of kaiBC promoter and found that this parameter is an important factor in repressing the kaiBC promoter.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBlotting, NorthernBlotting, WesternCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsIsopropyl ThiogalactosideKineticsPhosphorylationPromoter Regions, GeneticRNA, MessengerSynechococcusTranscription, GeneticBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsIsopropyl ThiogalactosideKaiA protein, cyanobacteriaKaiB protein, cyanobacteriaKaiC protein, cyanobacteriaRNA, Messenger

Identifiers

PMID18165308
PMCPMC2258689
OpenAlexW2089244577

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.