Evidence map›Paper›PMID 18165306›Full record

ArticleJournal of bacteriology2008

Analysis of YfgL and YaeT interactions through bioinformatics, mutagenesis, and biochemistry.

Phu Vuong, Drew Bennion, Jeremy Mantei, Danielle Frost, Rajeev Misra

Abstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Review
  2. Effects of pleiotropicJournal of bacteriology · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. TheInternational journal of molecular sciences · 2021
    Article
  8. Article
  9. Review
  10. Envelope Stress and Regulation of theJournal of bacteriology · 2020
    Article
  11. Article
  12. The big BAM theory: An open and closed case?Biochimica et biophysica acta. Biomembranes · 2020
    Review
  13. Suppressor Mutations inJournal of bacteriology · 2019
    Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Outer Membrane Biogenesis.Annual review of microbiology · 2017
    Review
  19. Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Phu VuongSchool of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.
Drew Bennion
Jeremy Mantei
Danielle Frost
Rajeev Misra

Funding

TARGETING AND ASSEMBLY OF E COLI OUTER MEMBRANE PROTEINSR01GM048167 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI MISRA, RAJEEV · 1997 to 2011
$2.4M
NIGMS NIH HHS R01 GM048167NIGMS NIH HHS R01-GM048167
6 · The paper itself

Abstract

In Escherichia coli, YaeT, together with four lipoproteins, YfgL, YfiO, NlpB, and SmpA, forms a complex that is essential for beta-barrel outer membrane protein biogenesis. Data suggest that YfgL and YfiO make direct but independent physical contacts with YaeT. Whereas the YaeT-YfiO interaction needs NlpB and SmpA for complex stabilization, the YaeT-YfgL interaction does not. Using bioinformatics, genetics, and biochemical approaches, we have identified three residues, L173, L175, and R176, in the mature YfgL protein that are critical for both function and interactions with YaeT. A single substitution at any of these sites produces no phenotypic defect, but two or three simultaneous alterations produce mild or yfgL-null phenotypes, respectively. Interestingly, biochemical data show that all YfgL variants, including those with single substitutions, have weakened in vivo YaeT-YfgL interaction. These defects are not due to mislocalization or low steady-state levels of YfgL. Cysteine-directed cross-linking data show that the region encompassing L173, L175, and R176 makes direct contact with YaeT. Using the same genetic and biochemical strategies, it was found that altering residues D227 and D229 in another region of YfgL from E221 to D229 resulted in defective YaeT bindings. In contrast, mutational analysis of conserved residues V319 to H328 of YfgL shows that they are important for YfgL biogenesis but not YfgL-YaeT interactions. The five YfgL mutants defective in YaeT associations and the yfgL background were used to show that SurA binds to YaeT (or another complex member) without going through YfgL.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsBiochemistryBlotting, WesternComputational BiologyEscherichia coli ProteinsImmunoprecipitationMolecular Sequence DataMutagenesis, Site-DirectedPhenotypeProtein BindingSequence Homology, Amino AcidStructure-Activity RelationshipBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli ProteinsYfgL protein, E coli

Identifiers

PMID18165306
PMCPMC2258660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.